Protein Info for mRNA_8431 in Rhodosporidium toruloides IFO0880

Name: 16799
Annotation: K15105 SLC25A12_13, AGC solute carrier family 25 (mitochondrial aspartate/glutamate transporter), member 12/13

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 693 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details transmembrane" amino acids 364 to 385 (22 residues), see Phobius details PF13833: EF-hand_8" amino acids 122 to 150 (29 residues), 24.3 bits, see alignment (E = 7e-09) PF00036: EF-hand_1" amino acids 124 to 152 (29 residues), 27.2 bits, see alignment (E = 5.6e-10) PF13202: EF-hand_5" amino acids 128 to 148 (21 residues), 17.4 bits, see alignment (E = 7.5e-07) amino acids 197 to 219 (23 residues), 14.4 bits, see alignment (E = 6.5e-06) PF13499: EF-hand_7" amino acids 195 to 254 (60 residues), 30.6 bits, see alignment 1.1e-10 PF00153: Mito_carr" amino acids 366 to 454 (89 residues), 78.6 bits, see alignment E=8.1e-26 amino acids 465 to 546 (82 residues), 68.1 bits, see alignment E=1.6e-22 amino acids 559 to 647 (89 residues), 79.3 bits, see alignment E=5e-26

Best Hits

KEGG orthology group: K15105, solute carrier family 25 (mitochondrial aspartate/glutamate transporter), member 12/13 (inferred from 58% identity to cne:CNC02690)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (693 amino acids)

>mRNA_8431 K15105 SLC25A12_13, AGC solute carrier family 25 (mitochondrial aspartate/glutamate transporter), member 12/13 (Rhodosporidium toruloides IFO0880)
MSGLLRSVVGGLTSSRVFAAPLRCDAPPPSGLSVKAPETTASSTELDKFRKTFYNFATRD
QIDGEVYLSEPDFVSAVAPEGDFNKIRREQYGILFKVADRRKVGRVNFDDFVAFEELLKK
PAAEFDVAFRVFDSNGDGVVKFDEFKQVFQSMRHPESIPFDFDAPWVTLYLGKANGGHVL
GFNEFTQLMKGLQGERLRQAFRHFDQNQDGYIEKRDFSRIIYELARHKLSDSVLANLENL
GDVVPDGKISYSECIAFHNVIREMDLVEKVVREACARSPDGKITSQDFTNHASRTMRYGT
FSPMEVAIIFHYARQGISAGEKPRLGLRDFGSLLDAKWGPPRPAGESKGKKATGTALHEI
GKSAYYFGLGGIAGGLGATAVYPIDLTKTRMQNQRSKVVGELLYKNSLDCVRKVYKNEGF
IGFYRGLPPQLIGVAPEKAIKLTVNDLVREYATDKDTGRIKLRWELFAGGLAGGCQVVFT
NPLEIVKIRLQMQGENAKITGAPRQTAGQIVKSLGLLGLYKGAIACLCRDVPFSAIYFPA
YAHLKKDVFHEGRDGKVLPYGEALAAAAAAGMPAAYLTTPADVIKTRLQTEARKGESTYK
GVVDAFRKILNEEGARALFKGGPARVLRSSPQFGVTLVAYENLKKHFPYPEPHQSLSELV
MPREEDLARVRARNALKVLLDVDTNIGIAKSQK