Protein Info for mRNA_8485 in Rhodosporidium toruloides IFO0880

Name: 16853
Annotation: K12946 SPCS1 signal peptidase complex subunit 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 112 transmembrane" amino acids 30 to 48 (19 residues), see Phobius details amino acids 55 to 75 (21 residues), see Phobius details PF06645: SPC12" amino acids 18 to 86 (69 residues), 86.6 bits, see alignment E=4.7e-29

Best Hits

KEGG orthology group: K12946, signal peptidase complex subunit 1 [EC: 3.4.-.-] (inferred from 51% identity to cci:CC1G_02699)

Predicted SEED Role

No annotation

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.4.-.-

Use Curated BLAST to search for 3.4.-.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (112 amino acids)

>mRNA_8485 K12946 SPCS1 signal peptidase complex subunit 1 (Rhodosporidium toruloides IFO0880)
MSLTAQLDALRDSLECKIDFVGQDLVEQRARVILWASAAVAFVLGFALQNLKVTFAIFTL
GFLGCLAVTLPPLPAYNAHPVKWLDPLDEYGERKSAVVAGGSPGAIEGKKDR