Protein Info for mRNA_6 in Rhodosporidium toruloides IFO0880

Name: 8374
Annotation: SUPERFAMILY--SSF47676

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1352 transmembrane" amino acids 1301 to 1329 (29 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1352 amino acids)

>mRNA_6 SUPERFAMILY--SSF47676 (Rhodosporidium toruloides IFO0880)
MPPAHPSAHSSFDAPYAPTEASAFEEAMMDFSPSYGDYPSTSSAFDGTSYRPSSADGLYP
PVSAFSLPAASATARTPSPLATYTGAVAPFSQLPFSSSIMPFGSSASYGTAQPGSSAAGS
SLAMQAAIHQQQRSAFLNPRSVELSAQQAPVTITPTALTASQRLASASASSSASSTPPPA
PPPRKTASSSSSAAASSSAATKKARAASPAVSVSASSSAAKKARESSRATASPAPSSTRS
AASPDADPVALWLQALPGIRSHLTQRRLTSSPLSSAQKLVGLLSEFSHTDRSSSASRWGD
ASDVPPEGRAEVLTALIRYAKDDFWKAWVEVGKVDAANVKGKGKEKDGASQAIVSDGLEL
LQVWLDGASKAFVKDKDGAKEKERDRKRKELEQASLALVLQVLAKLPVTIKHLMAYSSIP
RRAKRVSDKASDGAVKGAANHLVHKWTKLQESANLSSNGANGSSSAAPKRKSETNEAPAK
KVKTATSTASAASTVKKPVPAPTSAAKALPSFKKAAPAPKPDDPLARALANLKAAKTFSA
GPAVSNAQTTLAKLVGNAKGKKEESGAVSTAGDEPKKKKKTVRWKPDEELCMYQMIEARE
AATEAVGGDFHGMMEQQEGMTLHMHYETIDEMEEELDWNEPKDIVLSDDEAFAGLFDPKR
TPEVEVQEAREANLMAVDDTTTPPDSPGEAPEETITPDEEIRKIQLHEDLSRDDTVLLTI
KGAQEAPRALASDEQISALLGQLTANGLAQQLESVQGVLSAQTNPHQPPFGAGAPQPSTQ
QIDENTLAMLRTYPPEQVVNLVRDNPLLQGIDLHALGILAPPHGYAAPPPVQGYAPVPHA
QTYDGYVPPASYHVPPPNGGADPYSGYRPPGGPLEFVPNPHMRGSGGGQKGGLLSAGSKK
DVPCKFFRTRNGCDWGSRSANAFSGTYPIVAWSSSRSVAPLNPSPRPPVIIACETGEWLD
RVVSGSCGTVGRDIRWMRPLSESSGGGVIEVEGHPAQSSSSRSAQSAQRAFSAEVDDLCD
LASLFVVSVPGLHNSDLSLLPSVSDSPSGIKSSLASARVAGNALTFPYVSEKLARPPPEQ
FVRRFRKQCAKDKVVKLVKVDGLAGDFADEKEEVEKTKEALARADKLVGSLMTSASTPYA
VIVTSLPTSLPARPCSKKHTNSRSLKKRQAPGAGVNDDAIVEELLEEIAEEDQLQGDTLE
KMVETMQELEDVNGQDSPAAAESTTSPDYADKPEIGVTDVVEPTEEEYAHAVDPYTVGEW
EGSVLDVSPLQDDEDDGEGNGNGTSIFQPDPKSGIFHRYTLFSPGILFAIIVSFLVLIPT
VVIGSHALLSIETVQGLETKMQGSVGLDPSKQ