Protein Info for mRNA_12 in Rhodosporidium toruloides IFO0880

Name: 8380
Annotation: K12757 MYL12 myosin regulatory light chain 12

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 187 PF13405: EF-hand_6" amino acids 41 to 69 (29 residues), 24.5 bits, see alignment 2.6e-09

Best Hits

KEGG orthology group: K12759, myosin regulatory light chain, invertebrate (inferred from 45% identity to cne:CNE03510)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (187 amino acids)

>mRNA_12 K12757 MYL12 myosin regulatory light chain 12 (Rhodosporidium toruloides IFO0880)
LSPTSASLGLGRPSSGKARRSHPRESSGAYQLFDAKQVQVFREAFSLIDQDNDGIISEAD
LRGLLASLGQQPSPRLIHSLLHAQPLSAPPSSTPLPINFTTFVTLLASHLSPLSPEQEML
EAFACFDEKNEGFVRGGEVREWLGGTGDRMSEKEIDRLLHAPFYDPKTDLFNYRLWCSTL
RVTDVDE