Protein Info for mRNA_15 in Rhodosporidium toruloides IFO0880

Name: 8383
Annotation: K02321 POLA2 DNA polymerase alpha subunit B

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 453 PF08418: Pol_alpha_B_N" amino acids 2 to 34 (33 residues), 26 bits, see alignment (E = 8.8e-10) PF04042: DNA_pol_E_B" amino acids 152 to 380 (229 residues), 112.8 bits, see alignment E=1.5e-36

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (453 amino acids)

>mRNA_15 K02321 POLA2 DNA polymerase alpha subunit B (Rhodosporidium toruloides IFO0880)
MERSEVLDNLIDEAAQVFKEYYGIEEFGDPSIQSQDDILVVGRLCPETDTAKMTETSTWL
ESSRMLGSGSRVLLKFEPDMKVRGAPAGGGGMGMYPGCMVALKGQNGGGKLFAVKEILMM
PPIDATYTPPTELLTHQYGSDSKQLAGNPMSVIVAAGPYTVDSDLEYEPLQALLELAKEE
KPDVLILTGPFVDADHPLIKLGEVDEFPSQLFRSRISAKLANLLAATPRTAVILIPNGRD
LTSTHVAFPQAPLPKDPELGLPKGVRLLPNPTMFSINEVVFGITSVDVLWSLKSQEFFRK
CPDAEPAPEGAQEDPQAKDVMARVCRHLLRQRSFYPVFPSPPPSKMLDALNLDITHYDLV
KMGSSGPDIVIAPSIQKHFTRIVDSTIILNPSFLTKSSAPASAGTFARLTIHPMDQDNLN
ELAHSGMVDVGGEPDEPVEHRVWERCRVDIIKV