Protein Info for mRNA_26 in Rhodosporidium toruloides IFO0880

Name: 8394
Annotation: K04499 RUVBL1, RVB1, INO80H RuvB-like protein 1 (pontin 52)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 467 PF06068: TIP49" amino acids 15 to 378 (364 residues), 541.1 bits, see alignment E=4e-166 PF05496: RuvB_N" amino acids 39 to 92 (54 residues), 28.6 bits, see alignment 3.5e-10 PF00004: AAA" amino acids 67 to 117 (51 residues), 32.9 bits, see alignment 2.5e-11 PF17856: TIP49_C" amino acids 384 to 449 (66 residues), 78.4 bits, see alignment E=1.1e-25

Best Hits

Swiss-Prot: 78% identical to RUVB1_USTMA: RuvB-like helicase 1 (RVB1) from Ustilago maydis (strain 521 / FGSC 9021)

KEGG orthology group: K04499, RuvB-like protein 1 (pontin 52) (inferred from 78% identity to uma:UM06201.1)

Predicted SEED Role

"TBP-interacting protein TIP49"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (467 amino acids)

>mRNA_26 K04499 RUVBL1, RVB1, INO80H RuvB-like protein 1 (pontin 52) (Rhodosporidium toruloides IFO0880)
MPATTGVPQGSRESRIASHSHIKGLGLDDDGFAHADRAGFVGQRAAREACGLVVQLIKSR
RFSGRALLLAGAPGTGKTALALAVAQELGQKVPFCPMVGSEVFSSEVKKTEVLMENFRRA
IGLRVKETKEVYEGEVTELTPAETENPLSGYGKTISHVVIALKTAKGTKQLRLDPSIYES
IQKERVQVGDVIYIEANTGAVKRVGRSDAYATEYDLEAEEYVPLPKGDVHKKKEIVQDVT
LHDLDMANARPQGGQDIMSVMGQLVKGRRTEVTDKLRAEINKVVNSYIDQGIAELIPGVL
FIDEVHMLDIEAFTYLNRALESTISPHVILATNRGLTTIRGTESEPGSLGGEGIVSPHGV
PIDLLDRCMIVRTMPYSRDEIKTVLVTRAKIEGLAVQPEALDKLADDGVQTSLRYALQLL
TPASILSKLSGRTEITVEDVGETDSLFLDAKSSAKMLHARGEGQYLR