Protein Info for mRNA_33 in Rhodosporidium toruloides IFO0880

Name: 8401
Annotation: HMMPfam-Myosin-binding striated muscle assembly central-PF11701,SUPERFAMILY--SSF48371

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 704 PF11701: UNC45-central" amino acids 54 to 204 (151 residues), 58.1 bits, see alignment E=5.2e-20

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (704 amino acids)

>mRNA_33 HMMPfam-Myosin-binding striated muscle assembly central-PF11701,SUPERFAMILY--SSF48371 (Rhodosporidium toruloides IFO0880)
MAQTADVSVTKPAPSSPPGEVDDLKALLARSGPLDLDRSDVQKLARALADEGPSRAVALA
VLARFLAPSPTSTTRSSVQDTVESLLSGSDSTELVQGLVTLSAVLQVAPQLAASLLAQDS
LRSRLEDAVELVSRPVGKGKGKQDEETLALVELLSLAAGHAGMRGLVRKSAAVWLESLLG
SPRENKPSGNLRCKAMAGCAVVKLRLGKDEASTTGLPTAPVPPDSTSSVWSLDDLAQLAT
RLAIAGVSTPPADPDDEVLLPSLESLAYLTLTPSPSIKATASDSAFLSAILGLVTRTKES
SQSSPARDYAVATLLDHLTAFPPPLDAKSEAAQVERLKRFTSGGGGAANGQDSVRLETTS
DVEARIARLVQRDPSPIPTVRHLCTSPSLQTRRLAARVLHSFVTPQKLRGQLLQAGAARL
LLSLVRSIPTPFSPADDTPAVQGLAKLLITANPLLVFGPTASSPLLLEATTALTLPLGAP
AVAYEGIGLLPRFESIMALTNIAALDPSLTETLARLKLRDRPDTLLLAAIEELLLSQNTM
LRRAATELICNLVASDAGIDYFEPTSASSESDSSKPPSPRLHVLLALASSPDVPTRLAAT
GAFTSLVYSPKIVVALCSHAKWVEMLVALLEDDEPGVRHRVYEVWRVIGEMAGQLGDEKE
KERVRKGLKEGKVREELERAAQREQVIELKEAVRAAVDTVRSAE