Protein Info for mRNA_41 in Rhodosporidium toruloides IFO0880

Name: 8409
Annotation: K03125 TAF1 transcription initiation factor TFIID subunit 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1147 PF12157: DUF3591" amino acids 401 to 856 (456 residues), 610.6 bits, see alignment E=7.5e-188

Best Hits

Predicted SEED Role

"Transcription initiation factor IID 145 kDa subunit" in subsystem RNA polymerase II initiation factors

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1147 amino acids)

>mRNA_41 K03125 TAF1 transcription initiation factor TFIID subunit 1 (Rhodosporidium toruloides IFO0880)
MDGDIASTLSGFALNEVLSSLDLDASALGAVQSQLGIKGTNAFSRDSIYADRFADDDGGL
DDEDLEDDREDFEAMIDREMREEKYGKKGAASGASSAAAGGRGRLLRGEDDDFDEDYDED
EGTADERTRVKDEPMDDTLFGSPSPAPAQHQPMEVEKLAPPPAKKIDVKDLFPSFEHGKT
LEFTELFAMRPRKKRRVATDGVKLALPTLSEVPRARSSRDALLAPLRSLPPSKDDHVRQM
LLQAKAESMRDAVKAAGEEEGSEDEELRKTIARVNRKASTKWKMPRDERAFDLAELDEWE
ERIIWNDSSKPQVLASAFPKPLQHRNALFDGGDWVKSILWDGENPARAEYFTRLNLNLND
TEMLLEVHQPKDDNAPKRIAPKNALGSAEMLAPRDANLDPFNLSNDKEYEVPKEQKRQII
RQTFGALEVVHAYPAQKLQLPFYKTRLSKNETRSFHRPALQFPQNIPIGFTKVRSKKKKD
KHGRKIKKSEGAEALRGMQDITLKDTSNFVLWEYSEEHPPIISNVGMGSIIVNYYRKKSP
EDTFIPHLEVGQPLLLEGTDESPFKMFGFVHPGQTVTTLYNNLIRAPLFRHQPNETDFLV
VRVTIDGETHYYIRSIPHLYVVGQTYPQIEVPGPHSRKVTTLQKNRLMTIAFKLVAKNKD
SRIKVHRLTRYFPDHNDLQMRQKLKEFMEFVRKGDNQGFWMIKPSVHIPSEAEMLKMAEP
ETVCLAESMQVGLRTLQDAGYTNSAEEGGAGEDDSKLDIEQQLAPWITTKNFVNANANKA
MLKLHGEGDPTGRGEAFSFLRTSMKDIFLRAGETMEERLADMANRPKSAHKYNVQEQQEI
YKEEIARIWKSQWDSLSQKREPLLTQEDEDRHRGRLIAAKKAANKALAASAVDTPGSAAN
TPARAGTPGSRAGSVDLDDAASVASGRNTGKTKTLRIKRLVMGKWETEIVRDPSVIKAYV
HQRALIDEEKLEANELLPSDDESKNERRKKRLKEQLEKLKRNQERRLARKNQKLGIAPGQ
IGVGGKKAVKTETTRVCGNCGQRGHMKTSRKLCPRWAEFNQPKSTDTGSALPTNFGGGLA
LPPMGAAAKPTLKVKLSQANTAAGTASSPPPSGSAAATPAATPAPPADQQQPPPPPAAQP
GVAGPSA