Protein Info for mRNA_55 in Rhodosporidium toruloides IFO0880

Name: 8423
Annotation: HMMPfam-Endonuclease/Exonuclease/phosphatase family-PF03372,SUPERFAMILY--SSF56219

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 429 transmembrane" amino acids 21 to 42 (22 residues), see Phobius details PF03372: Exo_endo_phos" amino acids 108 to 417 (310 residues), 29.9 bits, see alignment E=2.1e-11

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Find the best match in UniProt

Protein Sequence (429 amino acids)

>mRNA_55 HMMPfam-Endonuclease/Exonuclease/phosphatase family-PF03372,SUPERFAMILY--SSF56219 (Rhodosporidium toruloides IFO0880)
MPNSPAEARSVTQTHRLTRHAVPWTRSLAALACGILIALLVLPRQPAFPGPSETAMTQLH
DTEPPTNPRTLRIGTLNIRYDYHARHPIVSPLKTLLQGSDGRKWGEHRWQERRDQLVDQV
LWEELDVVGFQEVLDGQFEDLRESMGAEYGSVGVGRDDGKKAGEAVPIVYRHSRLELLSV
SHFWLSPTPEVPGSKGWDAGQPRMCTVARFSDRTSTSSAEHADLIVANTHWDDRGLKARE
ESAKLILSRIEEEIRAGKSEAEAPVTEQEPLVVLLGDLNSPAEEAGYQVLTGGRYPAGGK
FEAAQTASGGRSFFDSRHELVTRGSKLATPGAVSGRFGPLNTYTGFSPSDTPKVIDFILP
FANSAFLSPHTSSAPSSSGSTWHVSRYGVVGNFFEDVGGRRAEGKEGERDAMVLSDHRLV
VAVFREAGR