Protein Info for mRNA_56 in Rhodosporidium toruloides IFO0880

Name: 8424
Annotation: K09499 CCT7 T-complex protein 1 subunit eta

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 565 TIGR02345: T-complex protein 1, eta subunit" amino acids 10 to 541 (532 residues), 848.1 bits, see alignment E=1e-259 PF00118: Cpn60_TCP1" amino acids 39 to 538 (500 residues), 518.7 bits, see alignment E=7.6e-160

Best Hits

Swiss-Prot: 67% identical to TCPH_SCHPO: Probable T-complex protein 1 subunit eta (cct7) from Schizosaccharomyces pombe (strain 972 / ATCC 24843)

KEGG orthology group: K09499, T-complex protein 1 subunit eta (inferred from 71% identity to cci:CC1G_00527)

Predicted SEED Role

"Heat shock protein 60 family chaperone GroEL / Thermosome subunit" in subsystem GroEL GroES or Staphylococcal pathogenicity islands SaPI or Thermosome, archaeal

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (565 amino acids)

>mRNA_56 K09499 CCT7 T-complex protein 1 subunit eta (Rhodosporidium toruloides IFO0880)
MSGRMPMMGNPTVLVLREGTDTSQGTPQLLSNISACLAIANTISSTLGPRGMDKLIVGSN
GQTTISNDGATILKLLDVVHPAAKTLVDIARAQDAEVGDGTTSVVLLAAELMREARPFIE
DGVSPHVIIKGYRKAAELAVARVKELAVTVQASDEADFRSLLMKCASTSMSSKLIHSSKP
FFSNMVVDAVQTLDPSSLDASLIGIKKVPGGGMEESMLVRGVAFKKTFSYAGFEQQPKKI
QNPKVLSLNVELELKAERDNAEVRVEQVSEYQAIVDAEWSIIYRKLELIAESGATVVLSR
LPIGDLATQYFADRNIFCAGRVASDDLKRVVSAVGGAIQSTVSDLRPEHLGTCDVFEEKQ
IGAERYNLFEGCPKAKTCTLILRGGAEQFISEVERSLNDAVQVVRRAVKNGTVVAGGGAT
EMEISAYLRSYARTLPGKQQLIISSYAKALEVIPRTICDNAGLDATDVLNKLRMLHARGE
TWAGVSVEPSTEQGKDEEEGVANNMDRFVWEPALVKINALEGATEAACVVLSVDETVTSP
QAQQAQGGGAPGRGGMAGRGRGRGR