Protein Info for mRNA_65 in Rhodosporidium toruloides IFO0880

Name: 8433
Annotation: K12882 NCBP1, CBP80 nuclear cap-binding protein subunit 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1022 PF09088: MIF4G_like" amino acids 488 to 691 (204 residues), 211.1 bits, see alignment E=1.4e-66 PF09090: MIF4G_like_2" amino acids 709 to 980 (272 residues), 228.6 bits, see alignment E=9.9e-72

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1022 amino acids)

>mRNA_65 K12882 NCBP1, CBP80 nuclear cap-binding protein subunit 1 (Rhodosporidium toruloides IFO0880)
MSGYGNYQGGGGYNGGGYGGGGGGGYGGDGYGRGGYGRGGYGGGRKRNRDDDQGGGQNYR
RRQNERGDYHSSPRRGGYGGGYGGGGGGMAMGYDRLPSLETQKNRFKEDLWKLGDNPNYD
PAIDIPSTAQSVETWFFRDRSHVFFTFRAAVSEMPHKLPHYAALLARLSLKSIEPPVSLA
SRISANPTPASWPPPPTDAPPLAPGLPAKPLVDGEDAQMAGEDSTDGAKAENGEEKKEVE
KVNVGKEVVQDLMKAFQAFLDERKWKSVRYCVTLFSYLTTVPPASPVISASSLVNLLASF
VSVLDEPGLRAARGDECVRIIVEALLRLDENALAEPGVDTLRDGVQAYLSSRRIEKDLFA
DEATKAQWQDPLEQLVTALSSASSSDADGIFPVYSVLPDVYASLTLAPAEEDETRAQAGD
DSLTLPLVLVPPESDDSDITIGAAVGLEHALPPAPITAGLRGDEGVGYEGTRLTLRLFDD
ESVSSDYDPAGIVVRSLIADVISLYETNRKEAATILLELPKWFKKGTFRVSKPARRPDDE
QDMPEEEAPEGPNWSLENLIVESILTSVLSLPAPPLTAMYYYSVLTELCRISPQTVAPSL
GKSIRKLYAALGTDREGSEESGGPVLDAEGVRRLADWFSIHLSNYGFMWGWNDWAPDMDA
SDKHPKRVFVKRTMDLEIRLSYFDRVKNTIPGSMLDAGVFPDDAPGPDYAYEDPEHIHNA
AATSFLRMIRAKAPISEATEELDSFQKSLETEHNMTAEAAENVKRDMAVQTILNVGSRSF
SHFLNALERYLTLLRNLSSSPSARQHLLTTVASFWKRHPQFHLIVLDKLLQYRLVDTRDV
IAWVFAPSEEQDGAKTKTWSDPDLWQMVKITLRSVTSQIDSAKMRVEGLKREEEMKGAEN
DTGKQEGEHALDAEGDLPGRDAQNPELDSANSYLAEAEDEQASVLVNVLGHFAKLLPADV
DEEDWETWWIKGWVREFCRSSFSHKALTSTVVSDGIDKLDLATTSPATKTILDAAKAYHS
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