Protein Info for mRNA_69 in Rhodosporidium toruloides IFO0880

Name: 8437
Annotation: K03029 PSMD4, RPN10 26S proteasome regulatory subunit N10

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 401 PF13519: VWA_2" amino acids 6 to 114 (109 residues), 73.1 bits, see alignment E=4.2e-24 PF04056: Ssl1" amino acids 9 to 144 (136 residues), 21.9 bits, see alignment E=2.1e-08 PF02809: UIM" amino acids 240 to 253 (14 residues), 13 bits, see alignment (E = 1.2e-05) amino acids 338 to 352 (15 residues), 17.2 bits, see alignment (E = 5.5e-07) amino acids 375 to 391 (17 residues), 23.8 bits, see alignment (E = 4.4e-09)

Best Hits

Predicted SEED Role

"proteasome regulatory subunit Rpn10" in subsystem Proteasome eukaryotic

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (401 amino acids)

>mRNA_69 K03029 PSMD4, RPN10 26S proteasome regulatory subunit N10 (Rhodosporidium toruloides IFO0880)
MSLEATMLVLDNSQHSLNGDFPPTRLQAQADSVFQIMGAKCRAHPENEVGLMVMAGKGPE
VLVTLTQDEGKLVAALHGVKSAGEADLVTGIQVAQLALKHRQNKNQRQRIIVFVGSPVKE
SQASLVKLGKKLKKNNVALDIVSFGTPDVDLSIPSLPSASSSSSSAPASPETNDSKLSAL
VEATSSSDNSHFLSVEPGPYLLSEKIAQSAILRPEGADEEMGAGGGGGGGDEFGVDPNLD
PELAMALRMSLEEERARQAAATAATSTSAAAALEPVPEGVSTQITDPTPATEPKGAHLTS
APETTDADVMRSSGPFRGDEEMQMQVGGEGEHAADDAEEDENLRRALELSRAGEEGGDDV
EMGGLPGVDDTVDGDEEDDIARAIALSMQDAEEEGKKDEGK