Protein Info for mRNA_70 in Rhodosporidium toruloides IFO0880

Name: 8438
Annotation: HMMPfam-Membrane-associating domain-PF01284

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 170 transmembrane" amino acids 12 to 35 (24 residues), see Phobius details amino acids 55 to 78 (24 residues), see Phobius details amino acids 81 to 83 (3 residues), see Phobius details amino acids 85 to 107 (23 residues), see Phobius details amino acids 133 to 153 (21 residues), see Phobius details PF01284: MARVEL" amino acids 20 to 146 (127 residues), 52.2 bits, see alignment E=3.4e-18

Best Hits

KEGG orthology group: None (inferred from 48% identity to cci:CC1G_08788)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (170 amino acids)

>mRNA_70 HMMPfam-Membrane-associating domain-PF01284 (Rhodosporidium toruloides IFO0880)
MPSNLDAHIKRSHIISFSLLALFSFIEWVICAVLVSSYNSHNDYPSHSIRDRVRFLLFVG
LWSFLFSFFYIAGFLTAATSFLFSIASHAVWIGITWVFWLAGAAAITDTLGGGLDCGNFN
MAHCHQLNAVEAFGWINWILITFLLAFVLLAGARSARDGNGFGGPLTPAV