Protein Info for mRNA_73 in Rhodosporidium toruloides IFO0880

Name: 8441
Annotation: K00698 CHS1 chitin synthase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 903 transmembrane" amino acids 455 to 469 (15 residues), see Phobius details amino acids 550 to 568 (19 residues), see Phobius details amino acids 580 to 609 (30 residues), see Phobius details amino acids 630 to 651 (22 residues), see Phobius details amino acids 658 to 683 (26 residues), see Phobius details amino acids 704 to 725 (22 residues), see Phobius details amino acids 736 to 756 (21 residues), see Phobius details amino acids 840 to 860 (21 residues), see Phobius details amino acids 872 to 897 (26 residues), see Phobius details PF08407: Chitin_synth_1N" amino acids 174 to 246 (73 residues), 81 bits, see alignment E=9.8e-27 PF01644: Chitin_synth_1" amino acids 247 to 406 (160 residues), 239.4 bits, see alignment E=4.1e-75 PF03142: Chitin_synth_2" amino acids 384 to 554 (171 residues), 80.6 bits, see alignment E=2.1e-26 PF13632: Glyco_trans_2_3" amino acids 386 to 609 (224 residues), 49.6 bits, see alignment E=9.8e-17

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (903 amino acids)

>mRNA_73 K00698 CHS1 chitin synthase (Rhodosporidium toruloides IFO0880)
MHRRPNEMYQPPSSPFQSRPDAPPTPQRPQGRGYVGGGQGGVQMQPQPSYHSHRSQDPYD
ETANLYGFYAAEDNASTTSHTALNMPVTEKDYYHSPPPPASQHLLSPHYSPSHQIPAYPP
PPSPSAHYVPMPSPHGYFPPQPLFSPSFQPGAYYESSSHYAQARQAVMKRREQKKVELVD
GHLVLELNVPRSLKQVSRFAGEDMREESGWLRYTAVTDDPDDFTRKRYRLRQVLAGRQTE
LFICCTMYNEDEELFCRTFRSVIKNIQHLQSRTKSKTWGVESWKKVVVCIVSDGRAKINP
RTLKILGLQGVYQDGVMKDSVEGRDTQAHVFEYTTQVMVDSDGTVKAGISPIQVIFCLKE
QNQKKLNSHRWAFNAFAPQLRPNVCVLIDVGTKPASDSIYKLWKAFDKHPHVGGACGEIT
VDLGKGWRNLVNPLVAAQNFEYKMSHILDKSLESVFGFISVLPGAFSAYRYKALLGEPLQ
AYFAGEKMHQPGNIASLSDSNMYLAEDRILCFEIVTKKREAWVLRFVKGAQASTDVPDSV
AEFISQRRRWMNGAFFAALYATTHYYRVWTSGQNVFRCMWLSIIFLYNAITLVFSFLGLS
SFYLAFYFLCTSATSDSSKDPFGGYGSDVIDVANWIYMSTIGVCIVCALGNKPSGSRWWY
ILVMFVFAALFGIAIYCTGWVVYNSVPHTVAGWKDIKDLLATSAFRNLVISIGATLGLYI
ISSVLHLDPWHVVTCFVQYMMFLPSFMIVLQIYAFANLHDLAWGTKGDTTVKDLGGTKKT
KTADGKEVLEVAVPTKDEDIDELWQHMKQDIATPQTKTKSKRSADQKQADHFANIRTNTL
LFYLGANLCLAIVFSSTKLWTKLLHVDGSVSYYSIAIFWAVAGLSAFRFVGSTMYLVMRM
FGH