Protein Info for mRNA_82 in Rhodosporidium toruloides IFO0880

Name: 8450
Annotation: KOG0519 Sensory transduction histidine kinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 719 PF13188: PAS_8" amino acids 218 to 258 (41 residues), 13.2 bits, see alignment 2.3e-05 TIGR00229: PAS domain S-box protein" amino acids 349 to 454 (106 residues), 41.4 bits, see alignment E=7.1e-15 PF08448: PAS_4" amino acids 358 to 450 (93 residues), 34.2 bits, see alignment E=7.8e-12 PF13426: PAS_9" amino acids 358 to 447 (90 residues), 22.9 bits, see alignment E=2.6e-08 PF08447: PAS_3" amino acids 362 to 426 (65 residues), 26.9 bits, see alignment E=1.4e-09 PF02518: HATPase_c" amino acids 630 to 719 (90 residues), 41.4 bits, see alignment E=5.7e-14

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (719 amino acids)

>mRNA_82 KOG0519 Sensory transduction histidine kinase (Rhodosporidium toruloides IFO0880)
MRDPPAESTGTAHLDKPDRAADGTRGVVPPSLADYLDDLPLPACVFAHSTISRDALAPPT
YQNLALEALLTQNMVLSGKEILPLPANNRDRTLLDVLDEPSLAHLHVWLLDGAATAPSSS
PSPRKRPHQPSQRHIALQLDENISFPKLRWRASVREGYTVLTHMPAVELVHGGGVKSAAV
QEERTGQAGEIQLGELEVSADRVRDATSLEGLAFTLWHSPIGMFRVNKDLQVTQANPAWR
KTIGLGPGESNDSWGNRIHPDDTERVFAHYADIAANSPLRRDECEWRWLMGDKEQNRVCV
IEPVIIEGVMEGYSGYLENIDEQKAIVSASQAREAQLQTELAILSDTCAVGLSRHALDGT
FLNVNPAWHAIVGMDQEAPLENWVENLVPEDFNRVMQAWGRTLETRDPLSIQFRFKNGRV
CLMQITPNHREKDKATGWIGSVTDVTAQARAEEAVLNMSKEREARAKKEAEEAEQRRRIA
VEEKRQQELLIDVTSHEIRNPISAILQNSDFTRSSLQQLRETLLSLQARNSLPSELSNGV
LHDLEEDIEALDAISECGMAQERIANDILGLAQIQLSKYNIAPIEFDLTTSLRNICRMFK
NECRTKDIELNLIIGSSLARLGPKARVFADPARLTQIIVNLLSNAIRFTAKSSSRIVTLS
VELSSTRPADDAPIVPPKGEDDVRQIDSGQPIFLLFSVEDTGPGMTKEETSRLFAKFMQ