Protein Info for mRNA_92 in Rhodosporidium toruloides IFO0880

Name: 8460
Annotation: KOG2914 Predicted haloacid-halidohydrolase and related hydrolases

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 PF00702: Hydrolase" amino acids 7 to 304 (298 residues), 50.3 bits, see alignment E=5.9e-17 TIGR01509: HAD hydrolase, family IA, variant 3" amino acids 201 to 309 (109 residues), 50.8 bits, see alignment E=1.1e-17 PF13419: HAD_2" amino acids 208 to 310 (103 residues), 38.3 bits, see alignment E=2.3e-13 PF13242: Hydrolase_like" amino acids 265 to 314 (50 residues), 22.1 bits, see alignment 1.9e-08

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (350 amino acids)

>mRNA_92 KOG2914 Predicted haloacid-halidohydrolase and related hydrolases (Rhodosporidium toruloides IFO0880)
AEFDVEGILFDMDGTLVDSIKVLEAAWAGVAQEIGQDPAEVIAATHGRRAIDNLRDLKPK
LRRLTNEQMEPHVEEFEKRILKEADEFTERVRSRRSSESSSRRNSNQSSRRPSRRGSSSS
GPNPLLSGLAGGQFSLSKISTGAATSEGGRGTPESGKTDADLDTVNQKLAKLDPNDDRMA
QLDADPFADSDEEDEEDNEFDLNGACTNKSVRILPGVRRLIESLPAGRFAVATSGAKTYC
HGALARAGIKRPKVTVTADDPRLTAGKPDPAPFLLAAKDLGIPIEKCLVFEDSPSGIKAG
VASGARTIAICTSHPVEKINSQGAHYIVPSLDCVHARRNKDGTIHITIDA