Protein Info for mRNA_95 in Rhodosporidium toruloides IFO0880

Name: 8463
Annotation: K14408 CSTF3, RNA14 cleavage stimulation factor subunit 3

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 991 PF02184: HAT" amino acids 251 to 278 (28 residues), 22.3 bits, see alignment (E = 1.6e-08) PF05843: Suf" amino acids 646 to 947 (302 residues), 206.1 bits, see alignment E=1.9e-64

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (991 amino acids)

>mRNA_95 K14408 CSTF3, RNA14 cleavage stimulation factor subunit 3 (Rhodosporidium toruloides IFO0880)
MSEPSTQTVDPRRARMQQNAQATASSPATPQPQQAPAQAETGAAPAEQTAETTAAPAQPA
ATAATASAESTPFSLPQATASSASQQDSTQPDSATATPAAEGETAPTDEDRATSQDMDAA
IAATLAMETDDRQTASNGLQSTAAAVAETIGRDEASTPTLYTAAASEGDVPGAVATPPPA
VPATSAAAADDSSSALPASSNAASADTKGKGAATSSLSRVAQLTARVEKDPLDGEAQLAL
LQDAEQKGDLERTREVYERFLSVFPDAAQQWIAYCNLELSHNLFERVEAIFGRCCLNSTS
VDLWRFYLDYIRRVNPIDPANIDAAKTARAVIGAAFEFALSHVGHDRRAGEIWSEYIAFL
REAPTRGNWEDQQKMDSLRKAFQRAVQAPVNNVEAIWQDYNAFENNLSKMTAKKFIAELS
PAYMTARKTLRELRAQHDHLYTPVLPHRPSWTSAEDRDALEGWKAYLAYEETNPLEIEDQ
GQLAQRVAFAYRKAIANLRFYPEVWYLAASYNLKSARVDDARKQLRDGLTANAGSLLLAY
TLADIEEGRSDFTACYGIYDSLIEHLNTRTSSLEADVEAEIASAVADKEVEHLAQIKAAQ
EDGREEEAESVEAREKRSQEIEELKKEIRERKAPEIETVKKAVANVWITEMRFARRSDGL
RQARQVFLKAKKSPNLTWQVVEASAAMEMYWNSEPKVATNVFELGLKSFAKEPEYVLRYL
DFLISQNNSNNARALFERTIAIIEPAKAKPIWDRMAQYEFQYGDYLAAQKMAQRYAETFP
DTTATVRFAQQHQSAGLEDAFALDLGPSFVRQIKRDTRARSPSPQRGRHKRGLSVDRDGA
DGQDQDGGDAKRARRGISPSPAPSSSGGGGSGWRPHGSEDHRRSAREAAPALNRAQPYML
DPRGNDVAILPDAVVFFLSLLPPATSFNGPHLNPASIMDIIGTTILPGSAPGPGLPGERL
GIPPRPKPQRPAYGGGGGGGAPSGYGSGRRY