Protein Info for mRNA_101 in Rhodosporidium toruloides IFO0880

Name: 8469
Annotation: K18719 NUP82 nucleoporin NUP82

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 946 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF10168: Nup88" amino acids 137 to 255 (119 residues), 49.6 bits, see alignment E=7.9e-18 amino acids 523 to 937 (415 residues), 47.6 bits, see alignment E=3.2e-17

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (946 amino acids)

>mRNA_101 K18719 NUP82 nucleoporin NUP82 (Rhodosporidium toruloides IFO0880)
MSWLSALPSHSIFTLPPPTPSTPSTDNTLNTSSRPTDRLAKSTISHSASSKSLFGISTAS
QPDSPSRTHASTPRRPALAASTSRTHGHDVGRILKGARTSRMVVARGTDLVVAVGSELRM
ASLAEVKARSGAETADGEADLGEYKVLNTPAINFEIQQLVLNSTSKLLAVVGAHSVVVVV
LPRRGWANTVGKTIECRCLPVGAFYHSLPGSPAIASALWHPLGADSSSLLLLTTDCTLRE
YSISTDVSEPSQTLSFLPQSEREKGKKRGFGFSAVDEDARTAAGMCVGDGKGDWGMMTLY
AVMKNGDVVALCPFLPKKAAIPPSYIHSLSTFVSSKVNYLSSSLSTRITPSSSSTSARAH
EALEARYTTQLAFVNSLVRQVQSATSQRLSPAGAEEEDEDDADAPVRITTPSRPAWLPTL
QGPFLLQPAPHDLSNGADDSACDISYLSPAAGGLGVLVVAYRDGKVDVLLEVEKVEGRFV
GEEEGRRRAEEGAVVLARRGGVKGKGRGFSADSDDEGVTETETETDLPTLAVYESIDLGL
ASELASSAVSSELRTNAPVLIRDPLYPDTLYVQHKLGAHCLLFGPWLEEVGEALRVDEKE
DGREGSEVEKVLRKGTGTEVLWVLKTVGSGDEEGEERNPPVEGLAVVNDVYLGYSLLLLT
SSLQLVGIELALRVDPSASALAAPSSPGPSASTTTDNKSAEPAYVSLLDTPFTVPPLLST
SSRSSAPAVPRLAPTKQPLEITPDTLRTFGKHVSTVQDAIRDLVGAADSVQSRLELQMKE
LSRQVGKLAELDSLRGELGKSVSATGLEGRLRSVEEKQRALLARTDRVLQRLIESHQPSI
SAYERKWFDELERLEGQIVGDDSGSLESRTRRLEAMLEALRPGLEELKRKEAGGGAQGTP
GRKGGMGEAQVKALEARLAEEAKLIADAKRKVERLTSSLSATSLAA