Protein Info for mRNA_102 in Rhodosporidium toruloides IFO0880

Name: 8470
Annotation: HMMPfam-PQ loop repeat-PF04193,SMART-Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins.-SM00679

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 308 transmembrane" amino acids 12 to 30 (19 residues), see Phobius details amino acids 38 to 59 (22 residues), see Phobius details amino acids 68 to 87 (20 residues), see Phobius details amino acids 94 to 117 (24 residues), see Phobius details amino acids 129 to 149 (21 residues), see Phobius details amino acids 159 to 182 (24 residues), see Phobius details amino acids 188 to 211 (24 residues), see Phobius details PF04193: PQ-loop" amino acids 8 to 65 (58 residues), 64.3 bits, see alignment E=3.5e-22 amino acids 134 to 183 (50 residues), 34.7 bits, see alignment 6.4e-13

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (308 amino acids)

>mRNA_102 HMMPfam-PQ loop repeat-PF04193,SMART-Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins.-SM00679 (Rhodosporidium toruloides IFO0880)
MSRYTAEQVTGWFGTVLWCIQLVPQVYMNYRRKTTEGLSNLLCICWMLSGVTLGIFAIVE
NINIPIIVQPHAYGSLCFVMLCQMLYYDRKWRWYAAAGAFGAYACTAAGFEVGMVYASRA
VEDRGSNGLTMLWGILSDVFLAVGFIPQFIEIYKAREVYALSYTFLAMDSAGAVFSIVSL
AMKTTFDGIAFTGYLVVLVLEIAIFILALLLNPRARRRRAAAEKPSGVEKDESTHIAPEA
SESGMPLPSEKVVERHSHGAGEAGGREAERKDVERHETVESGVTLAEEGRASEEKAHVQV
RAQGEEAV