Protein Info for mRNA_116 in Rhodosporidium toruloides IFO0880

Name: 8484
Annotation: K06072 DOHH deoxyhypusine monooxygenase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 321 PF13646: HEAT_2" amino acids 56 to 124 (69 residues), 59.1 bits, see alignment E=9.5e-20 amino acids 193 to 253 (61 residues), 28.3 bits, see alignment E=3.8e-10 amino acids 218 to 297 (80 residues), 44.8 bits, see alignment E=2.8e-15 PF03130: HEAT_PBS" amino acids 57 to 80 (24 residues), 16.8 bits, see alignment (E = 1.8e-06) amino acids 87 to 113 (27 residues), 27 bits, see alignment (E = 8.9e-10) amino acids 193 to 218 (26 residues), 17.9 bits, see alignment (E = 7.7e-07) amino acids 256 to 281 (26 residues), 22.3 bits, see alignment (E = 2.9e-08)

Best Hits

Predicted SEED Role

"Deoxyhypusine hydroxylase (EC 1.14.99.29)" (EC 1.14.99.29)

MetaCyc Pathways

Isozymes

No predicted isozymes

Use Curated BLAST to search for 1.14.99.29

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (321 amino acids)

>mRNA_116 K06072 DOHH deoxyhypusine monooxygenase (Rhodosporidium toruloides IFO0880)
MAGEDVYDQLDRQLNSHEVPLAQRFRALFTLKSLGGDRAIEVIGKGFDGESALLGHELAY
CLGQLKDPKALPILTKVLEDDKEHPMVRHEAAEAMGAIGSEEALPALRKYLKHENPAIRE
TCEIAVDKIVFDNSEEGKKAEPNQYPCIDPAPAASHSPLVASAHSAALAPATDLSIPDLE
RILLDTKLSLFERYRAMFALRNIGDREAVLALAKGFEDESALFRHEIAFVFGQLSSPDSV
PSLIDVLRRPHEEDMVRHEAAEALGGIATDECLPILKEFAQREDVPRVVRESCVVALDMY
EYERSNEFVPLPTLPTATASA