Protein Info for mRNA_138 in Rhodosporidium toruloides IFO0880

Name: 8506
Annotation: KOG4473 Uncharacterized membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 356 transmembrane" amino acids 84 to 102 (19 residues), see Phobius details amino acids 111 to 133 (23 residues), see Phobius details amino acids 263 to 288 (26 residues), see Phobius details amino acids 294 to 316 (23 residues), see Phobius details amino acids 325 to 348 (24 residues), see Phobius details PF01988: VIT1" amino acids 81 to 349 (269 residues), 218.7 bits, see alignment E=4.4e-69

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (356 amino acids)

>mRNA_138 KOG4473 Uncharacterized membrane protein (Rhodosporidium toruloides IFO0880)
MSTSRESVAGNTPSGAVALPPRKNRADAASNAPVWSLEASADGNAEVPLAAKCDLHNRER
TVCCRDLKGDDERHLIDPDVVKDIIIGLADGLTVPFALTAGLSSLGSSKLVVTAGIAELV
SGALSMGVGGYLSAQAERDHYRYLKKQTRERVMRSCAGEMEREVNAILSPLGVDDSLSRR
VAGALLSVEATLPPPEAPLSITRQCLNAIARRPRFTNLSNSDPERARLLPTKTDSDTDDD
DKGLTAFLLKFGEGLEETTDARLFISALTIGLSYFLGGLIPLAPYFFFHLAVQALWWSVG
ITGVVLLLFGAVKAYVSGAEIGVAGYAYGSISTLLVGGAAAAASFGIVRALEGRGE