Protein Info for mRNA_140 in Rhodosporidium toruloides IFO0880

Name: 8508
Annotation: K14571 RIX7, NVL ribosome biogenesis ATPase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 791 PF07728: AAA_5" amino acids 148 to 271 (124 residues), 25.8 bits, see alignment E=9.1e-09 PF05496: RuvB_N" amino acids 149 to 270 (122 residues), 27.8 bits, see alignment E=2e-09 PF07724: AAA_2" amino acids 149 to 242 (94 residues), 21.9 bits, see alignment E=1.7e-07 PF00004: AAA" amino acids 149 to 281 (133 residues), 149.3 bits, see alignment E=8.5e-47 amino acids 520 to 649 (130 residues), 155.6 bits, see alignment E=9.1e-49 PF17862: AAA_lid_3" amino acids 305 to 341 (37 residues), 33.6 bits, see alignment 2.7e-11 amino acids 672 to 712 (41 residues), 46.8 bits, see alignment 1.9e-15

Best Hits

Predicted SEED Role

"Cell division protein FtsH (EC 3.4.24.-)" in subsystem Bacterial Cell Division (EC 3.4.24.-)

Isozymes

Compare fitness of predicted isozymes for: 3.4.24.-

Use Curated BLAST to search for 3.4.24.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (791 amino acids)

>mRNA_140 K14571 RIX7, NVL ribosome biogenesis ATPase (Rhodosporidium toruloides IFO0880)
MSASQPLVHLNRQLSGVQYRRPTTLSLNQPSPLGAVQQQPETQGGDEQPSDAAPVASTST
APPPASSTPTPTASKRKLRPSTSSRDPSTPKRSRPATAASSSNHAPPTTRLSDLGGVDSC
IEQMLELVALPLMHPEVYLHTGVRPPRGVLLVGPPGCGKTMLAGAIAGELGLPFISISAP
SVVSGMSGESEKTLRETFEEAAKQAPCILFIDEIDAITPKRENAQREMERRIVAQLLTCM
DDLAWDKNDNKPVVVIAATNRPDSLDPALRRAGRFDAEIALTVPSESGRERILRVLMSKL
RLSGDFDYKALAKNTPGYVGADLSALTGAAGVIAVKRIFETFGVDGVAGEEGMPVDMKTV
EGALAALSQPPQAGQDDDAEMQVEADGTTAPASTATTPGASTPTSELPPSLAAAIPALPF
STLPPSLASLPIASFLRSHPTALTPAQLSCIALTNSDFTRALSIVQPSSQREGFTTVPDV
TWSDLGALHHIREEMRMSIVRPIRRPDVFSLLGLNAPCGVLLWGPPGCGKTLLAKAVANE
SRANFISVKGPELLNKYVGESERAVRQVFARARASSPCIVFFDELDAMVPRRDDSLSEST
ARIVNTLLTELDGLEPRKQVFVIGATNRPDILDPAMCRPGRLDKLLYVDLPSAPERAEIL
RAVTRKTPLAPDVDLDKIARDEKSEGLSGADLSALVREAAVSALRELFDSIDLDGPAIDP
AQPQPQGQAVVQMRHFETALRKANPSVSRQQRRRFEALRKKFAGTPVGHKGEPVEQEQDG
GEEVKGDAQEQ