Protein Info for mRNA_142 in Rhodosporidium toruloides IFO0880

Name: 8510
Annotation: HMMPfam-Protein of unknown function (DUF3712)-PF12505

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 500 1000 1500 2000 2500 3000 3462 transmembrane" amino acids 122 to 146 (25 residues), see Phobius details PF12505: DUF3712" amino acids 214 to 337 (124 residues), 80.1 bits, see alignment (E = 1.7e-26) amino acids 537 to 638 (102 residues), 42 bits, see alignment (E = 1.1e-14) amino acids 1015 to 1138 (124 residues), 80 bits, see alignment (E = 1.8e-26) amino acids 1329 to 1433 (105 residues), 35.2 bits, see alignment (E = 1.4e-12) amino acids 1776 to 1899 (124 residues), 73.1 bits, see alignment (E = 2.7e-24) amino acids 2080 to 2192 (113 residues), 50.1 bits, see alignment (E = 3.5e-17) amino acids 2536 to 2659 (124 residues), 82.1 bits, see alignment (E = 4.2e-27) amino acids 2847 to 2965 (119 residues), 26.3 bits, see alignment (E = 8.1e-10)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (3462 amino acids)

>mRNA_142 HMMPfam-Protein of unknown function (DUF3712)-PF12505 (Rhodosporidium toruloides IFO0880)
MWPAKPQTAATHEPFRNHDEPASMGDDQYLRARRPGSVGSSAGGHSAESQTGLIGAGAPV
ARRSSQSTNGTTGNGTGRAGAAGAGAYDDGLDDSYKGGMPIGLLAALGTPYAKKPIYKSK
KFLILCPILTIGALAIGILLLVFPILRAVALHTLSTSVLHIDASNITSPTNSTFTLTLQG
QVKKVGIFPAHLYFHRPVRAYWVSPKNTSREIQIGHFNLDYIGVAAGHGRIKQQTKFFID
DEPGFTEFAQYLITQDQFTWRLKSTEVQAKAFGFIPANHLDFTKDLTLPAMANFTNIEIK
DFQLPGDDPAGGISLSVVTSLTNPSSFGIEIGVLSVSLFYGDLLLGPAHTSGPVNLTAGV
NYVHLVGRLLPYENDNAALQKLGTLFSAYLNGDTIPVQARGLSIDLPGGENIAWLTAGIS
ALTLNVPLKSPTGRIAPITGITIQELSLQFDPSQPYAPQANSSAVSATFGLPFGFSLNIV
RLQNDFGIVDNRTIVASLSTPYGSSNTTITSRNAGYTLGDITLDLPKAPLTIGPAYNDHL
AFDQFTYDLTTTNGSRFLLVGNTSAVTDTPLGQVALTDIGFTVPAGLIGLESLKTYPTII
ESVDVLGGTPDAILLNISVGLTNPSNLDLQVGNVTFQLFNGDSFLGTTVLPDLHLTTGFQ
TRPSVGYFQANNNQGSLDTLTAFVTGNDTQLQISGFNGSTATESLTQAFMALHLNATLPG
LKTKLLNYANLTVLPTTGVTNDFADSTVSLANPFTAPLNIRNIQSNITSFGLFVGSIVTD
TNFASAGHSNTDSPTLPFNLNLYPPDIFSLLRALAVEQGMATDQIDGIVKLGGYEYVPTT
PSPTPSRRVKRSQEYDAYGYLDGLDGSREGLAQIGNETGDALVFSQESKRGLEKRNIYTG
FDLPSYVLKAFSGLKVNVDLLTTLNIGEYTTSLKYSQPGVAAYTDSSLTLLLPVLARPIV
QKIVDEASLGVDTVMITNPTTPSFQAGLVGSIRNSGPFDAVIAFAEGLTVAWNGQPLGQI
AMPNVSLVADVGADLNLEAAFNVADVGHLTDFTGYLLTEPSFTWQIYGQNLEVSALGITV
GGISIMKDVVLTGMNGFKNLVTIESFDLPYNDPAGGIHLTLQTQLTNPSSVGVALAGIGF
QNFFGDTNIGPAASNGSFALTPKSTIQLPLVGRLIPQSDPKALADVSTIFNGFVHGVPSE
LVVHGDSAGNTASWLETGIKNLAIPVILPAAQNLQVISGININSLTLQFSQSDPWNPAFT
TTDTIASFGLPFAFPVDITSLASKIYSADTGSGQRAKRANGDFALLDIPSNPAKTDVVAR
TIVLAFANVPFASVDNNLFASFLTQVTDDVSKTFQLHGAADTVAGTAVGPLNLDGIAFSV
STSLLGLQGLNAQPATVSDLDVYHGFSNYLQINVNAHLYNPSNITIGTGDVAFGLNFQNQ
QIGTANINNLVLAPGVNVVPTAVHYEPKGGDAQAAGQLLLENYIQDVNSSTIIQGTDSTT
PIDSLKPALKTIQLGTIIPAYTQNLITQAALTFPIDIATTNKASTKVTLQNPFTAQVNLL
QVLANATYGDNYLGQVNTKPNPVFSTAGHSTATSQDLPFTLNTDPKALIRFLEAVAAANG
VDLGILIPEFDYVLGLDSTASSVTTTVNTQPETCAPTGTTKLVQGLILAAVKNLKTNLTI
QSTVKLDDFQTPLDFNQFNVPTVLDDSVLYLTGILGKTIVSHIVDGTALTFTTGQVTDLT
NSGFKVALTGSLLNAGPFDALIEFPQGVQVIYKGNHIADLALPSICSSGGSGVPNLQTTA
TLTITDKGRFTGFATDLLLNPDFTWTITTNKLRVYALQTIFDNVSLTKDVSFKAFDGLPG
VTITRPDFPSDSPHGIALKTETAIPSLSNLGVQLGTATFIANFQGVEVGPISANDLTLAP
LATTDAVLTGEVLRQTSSKGLNTLGVLFSQFLQGANQTLDVTGQEVVSPAQPDSPVDWLS
AAFKKLTIHVTLPGGHYDIIHSVTLQDLTIQITEQSEAYAVPTSNNRTVAIYQNPFGFSL
TAIAAGGDFYINYNGVDTALLPLPVAKSVSAETSTGNNATLVLDFKKQILTSLNTGSFND
FFNAVTNTAEVSFNLHGGANVTAQTNAGNIPISGIPFSVGTSLAGIQSLNARPTVVSNLD
VHHGYPTYLQILADATLFNPSQITVITNDVNFGLDFMDQIIGTVVIGDLLLIPDTNVLGT
EVRYAPTGGASTAAGMVLLANYIQGITSNVAIAGTPDTTPYGSLQEALGSIKIQTSIPPI
HQLLVTKASLSFPIDIADTGIAEASFDLSNPFTASINLQALVANATYDTFYLGQINQQPL
NPEISAPGHKNITSRKVPFELTDDPKFLINFLIAVAKANGVDLGILLPEFQYVLSEASTA
TSVTSKVNTGKETCTPTGTTKEVQNIILAAVKNLKTDLGIQSTVALDDFVTPLNFAQNGV
PTVLDDSVLYLTGLLGRTIVSHIVDQAELTFSGGNVTDITDNGFKVALTGSLLNAGPFDA
LIEFPDGVDVLFQGTKIANIKLPPICSAGGSGVPDYKTTGTLTITDQGAFTSFASYLLNN
PSFTWVITSNTVQVSALQTIFSNVTLTKNVTFQALNKLPGVKLTNPDFPGDASNGIELTV
DSTIPSMSNLGFELGTVNFISSYHGSEIGPVHGSGLTLAPMATTPLPLEGTIIYRNDPAG
VAALGEVFSQFLMGKEVPLDVTGDSVVTPAQPGSPVSWLSAAFKTLTINVTLPGKQFDII
SAISIKDLIVTVTQPSEAYAALIQSNETDVTYKNPYKFSLQAIQAGGDFIINYGGSDAGQ
LEVPVQDVVSSQTSTGNPADLVLAIRQPGPLVAINQGTYNDFFAAITLQSNVGFTLHGGA
NVTARTKAGDIPISGIPFSNIQTTFPGINGFGGKATIPETPVVIGGGSGDPFNPSPGGEF
LRITLSTILDNPAPLVLHTNDASFEVIYKGTQVGRAYINPLDLYKGSNTLPTEFHYQPAN
PGDATAEDLLTQYLETKGQIPLTIQGDGSSTPYGSLKEAFTGVHLETSFPGQGIPLVHDI
QIFVDFVTAFCNNTATFDFRINDNLKTYITILTLSGTASQNGVVYATFDYTFANPTTTNA
GENPGPYTEQVLAKLPQGAAGSLPLLVNSAQGVDIDITSKVSIGGYVAPSFKYSQKAVPY
TVVITAGGSTVQGGLLGALTGLLGELGSLFSCIGGVLSPKGPIPGLLSTLLHITAPISSI
VSGVLSDVSGVVSGVTSVVGGVTSEVGSIVSGVTSLAGSVIGDVTSVLPTPVASAVGAAT
SVAGAAAGAATSVAGGVVSQATGAVGSIVGGLGLRERDQLALEDVFAQPTPTAVPVHTGG
NKLSPTSTIDVDAAGPTITPTPIVQSYTPLRPEDSLAIAAYQGGVDPAVFSRVLKKYGFE
MGEDVQVYRQKREEREREAKLKKRNEEVEKAQKKKRWGSRTH