Protein Info for mRNA_159 in Rhodosporidium toruloides IFO0880

Name: 8527
Annotation: Hypothetical Protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 289 transmembrane" amino acids 20 to 43 (24 residues), see Phobius details amino acids 63 to 85 (23 residues), see Phobius details amino acids 103 to 127 (25 residues), see Phobius details amino acids 139 to 160 (22 residues), see Phobius details amino acids 177 to 198 (22 residues), see Phobius details amino acids 218 to 239 (22 residues), see Phobius details amino acids 245 to 266 (22 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (289 amino acids)

>mRNA_159 Hypothetical Protein (Rhodosporidium toruloides IFO0880)
MSSIGLSTFFPADAPVPSALVFRLTEVNVASLAVACFLFDLVLREARHYWKRAWRNDTWF
WRLAVPYMVFCCGADLGLFAAAAGVGLRDLQSGGYSRDTLDYIYIVSKFTLWSSGMLAEA
FFVLRVWMMVQDRRLKPIVWVLYFITSAPFAAAFCLFLLSKYHDFRYGLPARVMDLVGGW
CNLAFAGYTSCILGYRLYEQRKRDYRSQDSLIDIFRGALMTSALIAFTSLGGAIAACFIH
DPANYIISAFFFNIYPQLAAASCIFAPTNGRPCAADPGPTRADMEAESS