Protein Info for mRNA_179 in Rhodosporidium toruloides IFO0880

Name: 8547
Annotation: KOG2886 Uncharacterized conserved protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 181 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 53 to 73 (21 residues), see Phobius details amino acids 93 to 116 (24 residues), see Phobius details amino acids 149 to 173 (25 residues), see Phobius details PF13664: DUF4149" amino acids 18 to 122 (105 residues), 81.2 bits, see alignment E=3.1e-27

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (181 amino acids)

>mRNA_179 KOG2886 Uncharacterized conserved protein (Rhodosporidium toruloides IFO0880)
MMTATSNKRKGSPFAFVLLCTALGSTVWHSFIGGPTAYKALPRQQFGHLQSRLFPRFFAL
QTSSALALLGLYARGGGKVSWTGWWRSGSDRTVQALMLLVLTGAANWIVVGPWTTAVMKR
RHRKERIEGKDYSDPDASSEMKALNSRFAFLHSVSSILNLGWLVTAAAHAAFVAEYGTTR
A