Protein Info for mRNA_181 in Rhodosporidium toruloides IFO0880

Name: 8549
Annotation: K12870 ISY1 pre-mRNA-splicing factor ISY1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 308 PF06246: Isy1" amino acids 1 to 300 (300 residues), 305 bits, see alignment E=2.5e-95

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Protein Sequence (308 amino acids)

>mRNA_181 K12870 ISY1 pre-mRNA-splicing factor ISY1 (Rhodosporidium toruloides IFO0880)
MARNEEKAQSMLYRFREAQAAELGLSQRTDRRPRVASSCKDLRQCERWRGEILREISRKV
SKIQDAGLTDYEVRDLNDQINKLLREKYHWENQIIALGGANYKRAAGKITDADGREVPGQ
RGYKYFGRARDLPGVRELLNASAADNAELESYKTVKATMFDNAPPEYYGNLAEQGEEGKR
LLEAEAKAEQAAWEEAVSNLEDEIEDVPSIPLPQRTTISLAPPSAEPDAAGKRKAPASAA
SKKKTKLADGSAAASQAGSAAAAGFESIFTADQLQPPKLLSAEEMEKALVKRQKEMLLEE
YGVDGEQQ