Protein Info for mRNA_185 in Rhodosporidium toruloides IFO0880

Name: 8553
Annotation: K11874 UBP16 ubiquitin carboxyl-terminal hydrolase 16

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 640 transmembrane" amino acids 20 to 43 (24 residues), see Phobius details PF00443: UCH" amino acids 131 to 573 (443 residues), 127.5 bits, see alignment E=6.7e-41 PF13423: UCH_1" amino acids 444 to 552 (109 residues), 24.3 bits, see alignment E=2.2e-09

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (640 amino acids)

>mRNA_185 K11874 UBP16 ubiquitin carboxyl-terminal hydrolase 16 (Rhodosporidium toruloides IFO0880)
MSYSPYAASDQYTTIDLQPLFSAVASALLVLLVALSASSYYLGLDPLTAPVDSLNALTEM
ASLGVSSLLGKSGLVKLDWDKGDMASGNGLASLKAAADGTGENGSFGRRYRETKEGKLRA
EGGGQYFPGLLNAAGNLCFLNATLQSLASLPSLLTYLDQLVSSATSLDIPTPVSDSLLDT
LEALNTPSTSRPAPLRPLELANALAASSPSRRRLLASSDQQDAHELWGMIRDAVEEEAGK
VLAAQDKEEAAGSGLKEVAKIKSGLGITVSKKRSRRGATDPWFWLRSQRIKCMQCGYVRD
TRHEGEELLMLQVPAVTSCSLYDLLAEYTKTDLISEYDCRKCAMLATLAKLEGQRDRLAL
TASSDRASSPPPPAKSKNPFELPPDATADGKVKTMTASRKDRRRKMQKLVDKVKSAVDAG
DWEKEFGEDVKMERSGSAAGKLVRLARTPDILMIHLNRSTHYSYAGPIKNSCQVTFPEFL
NVSPFCDGTQPRSTTDDSPPPPSDVYRLSSLVVHYGSHSFGHYVAFRRRPLSDTDSDSAT
QAALPEWYRISDETVDPSSVNEALRANPFLLFYERYKADDSASSDNAGLDRLDALMKGAK
ARVVESWRASSSRAQSEVVEVEVDGDGAESAVAVDPLVSP