Protein Info for mRNA_192 in Rhodosporidium toruloides IFO0880

Name: 8560
Annotation: HMMPfam-SUR7/PalI family-PF06687

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 210 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details transmembrane" amino acids 102 to 121 (20 residues), see Phobius details amino acids 128 to 154 (27 residues), see Phobius details amino acids 175 to 199 (25 residues), see Phobius details PF06687: SUR7" amino acids 8 to 188 (181 residues), 58.6 bits, see alignment E=3.7e-20

Best Hits

KEGG orthology group: None (inferred from 39% identity to ncr:NCU01357)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (210 amino acids)

>mRNA_192 HMMPfam-SUR7/PalI family-PF06687 (Rhodosporidium toruloides IFO0880)
MLGFHHFGTFLLFAATILLLVSTITTPVVDRMAIAKASLRGNSATVNFGALGYCIRVAGS
SDACTKAQVGYQLPQALVNLAESTGVLSNTAENAIEATTKALILHPIACGVSFLAFLIAA
LSDRLGFICAALIAFVAMLCAAVAMVLDIVLFYVLKAYLRKNNIGSLVSVSYSVGTWTTV
AAFCCLFIGMFFTLCACITDRRRRRRGEKY