Protein Info for mRNA_193 in Rhodosporidium toruloides IFO0880

Name: 8561
Annotation: K14573 NOP4, RBM28 nucleolar protein 4

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1132 PF00076: RRM_1" amino acids 422 to 486 (65 residues), 58.8 bits, see alignment 1.9e-20 amino acids 630 to 687 (58 residues), 57 bits, see alignment 6.8e-20

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1132 amino acids)

>mRNA_193 K14573 NOP4, RBM28 nucleolar protein 4 (Rhodosporidium toruloides IFO0880)
MPAPKRYFDNDSSAGPSPAKRSRGDGPSQRGGRGRGRGGGGGRGGGRGGHGGQRGPPREK
KEPFKPKDGFISAGLKAYTDAAAEAKEKSEDAAGADAASHQTTLYLTHLPPSLTSPQLTL
IFSSYAPLRAAFVVSSNSSSDSAPAPDFGGSSANAISLKAGRDRTGKSTSRGFGYVRFVL
RSDAESCLAEWGTKEGIPRSLVNELAGQEGLAGVEWDKVCGPGGIKVQWAKKKLKEGEKP
EGADKNWKVKGKAPAPPPPQAKEDDEVAQEEAKTKWRPGVWDHNASRTVVVLGLPLPGEA
GSTEEADEGDEQDGEEEKMDVDAQAESSTAPSAAKKGKQIDWKKALKQRAKKIGDVEDVL
FPVEMASGEQAALVIMYTPRHAHDLMSKLNNHVFRGVLVSAAVKSSWDLCQRLGRSKGGG
RLLVRNLGFDITTADLRAAFARFGPIHSITLPINPSTSKPRGFAFVYFVTRSHAESAMKA
VNGTRIYAGMASERIASEGGKEGKKKEVREKKKKEKESSGGGGGEKGRVVAVDWALSKEE
WQKAQEAEAGGEAAEGSASEGDEDEDESEGSDEESEDEDEDSDMSPVPEDLEQDSDMSPQ
PVGANERGDEDEEEEEEEKDSQEDQQNATLFVRNMSFEATEAELYDLFKQFGPVRYARIV
FDPVTKRSRGTAFVCFWNKEHAQAVLAESEALNKGVFGETSTKKTTLLMADPGSSSASRL
TLHGRVLAAVPAVSKGQADKLREDRDKKGGAKTDRRNLYLMREGVIFPTWAIAKTLSAAD
MDARQSSFDARKGLLRSNPSLYISRTRLSIRQIPLYVSDGMLKRLANHAIREFERDVKAG
LQKPLTEEELVTFVADASGAKEPTWNKVERKKGIPLGKVRQSKILRQNDRVDALTGLGRS
KGYGFLELGTHADALRVLRWANANKEVNRLFRVWWREELDKMVESVEKGEGKLGKGLKAG
EKEDRLKRLQEKRKELEEEEYLAKEKDAKREAQGKSLTGEAGRSSKCLIIEFSIENAVTT
KRRAEKAERAREKARRAKERGGEMSEDEEDEADGEEDASTASPKKKDGKRAKGKKGGNKK
RKADDGESEAASASPKKRAKADAGGDEDKPAKEGSRIGSLIGRKRKMKKGRK