Protein Info for mRNA_196 in Rhodosporidium toruloides IFO0880

Name: 8564
Annotation: K11230 SSK2 mitogen-activated protein kinase kinase kinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1427 PF00069: Pkinase" amino acids 1039 to 1319 (281 residues), 222.1 bits, see alignment E=8.6e-70 PF07714: Pkinase_Tyr" amino acids 1040 to 1314 (275 residues), 117.5 bits, see alignment E=6.5e-38

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1427 amino acids)

>mRNA_196 K11230 SSK2 mitogen-activated protein kinase kinase kinase (Rhodosporidium toruloides IFO0880)
MPSRPPPSASQTSLAKAHAKSARESSLAASHAISRRRATGRSFIGISRGGDGGPVHGAMY
DAEDDPDRLYYSRGLGRLDSDEDSADEDSDVLGEGDLGWVLSEDEHDDGEGDDDEQSGRA
GPSELSTYRRPSVSYNLTPGQGHTLSSEETPSEVEDDSPEVKARFEWQHMLNNVLSGNVL
KSEKTRLSTASLSGTKSLKNGFVDGFSSGRRQRAYAIWLLLRAKVRGRTADEESRFLEEA
RSKVDDVLEEVSKFRVTDLKQEEGGIEIDSTVRQRNAADQVGSLLKRVDWCETLYPSRKA
LSLEKEGFTSDEVVQRLDALRTWQQITRRLKVTVGILQKWTGGDWEKLSQLAFSGDDGKT
PTGQPGQSGTTTPNGAGPNGPPAADRGFVAVIVREDSLAKTFENRILTDLFSLVDTAKAA
VIDLQPLFAEMNLPGFTDDLFRLAIFPSRLAQEALRTTLDSVSNIHDPSVILIDQLTNDL
RKGLEVACQIKRQYTELATPEPVTGWALPERVDGYEETLLATLRFFFKLLHWKLKSPSKA
IYFKETEIVENEWGFLSTVTEEIDGGDLLVGEHFSTLTHRLLVRVMSYFETQLQVLETRD
MTAQETSRWFSQTLDNVRARHRKLLRFGRSMLLRFENAAEYSLDGIDLGTFIESLVDSDH
FLVYTDVYEAEATYIVADPSLHEHPELVRQILVRCFSNETQNDAPEHPEHPMHYVLLLSP
RDPFVWTGRVMDLNLGGKVDYDLRERRVRLVSDGPAARLARSKQTFLDLFPAFKRNTVVE
HKAHLASVNRETRKISRAIYRLAETVLGAYDRVKAVSQRRPGQAQELLGSYFTFAADLGT
RSLRYIEPALRSRFLLALMKFSIKWVAFICDDCVPTDPRTFKWAVAALEFAMSMTKNDNI
LQFSEGEFALLRSKVASCMTLLISHFDILGARSSYEAKKEQERIDAARLATKEQLAARLA
ALRATRQQGEDEDSQSSVGSLAMAWEQRMEALKAVEDSRRAVEAGNRAVGRVLDHNLAED
RSLAFLASSSLSNISLRWQQGKFIGGGTFGNVYLAVNLDSGEELAVKEIRFQDLQSAPHL
VKTIRDEMKVMEMLRHDNIVQYYGIEVHRDKVYIFEEYCPGGSLANLLEHGRIEDEIIIQ
IYALQMLSGLVYLHSQNVVHRDIKPDNILLDGNGTIKFVDFGAAKVLAKNQKTLASRSRI
GAPVALDPAAAPADANSLTGTPMYLSPETVKGERRGKKGAMDVWAVGCVILECATGRRPW
SNLDNEWAIMFHIGIAVQHPPLPEPHQLSELGIDFIRQCLTIDPDKRPSAEELMVHPWIQ
EATEQIQAAYEEESGPTSSFRSSGSSGAYSTTPSSYGPEGESGQPGAPGVILEEPEENDR
EEYDEDQGYAGPEEGGYDAQDEEVEEGEYDDDERGLAALREEDEDED