Protein Info for mRNA_200 in Rhodosporidium toruloides IFO0880

Name: 8568
Annotation: K15541 MPE1 protein MPE1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 680 PF08783: DWNN" amino acids 6 to 79 (74 residues), 108.1 bits, see alignment E=3.3e-35 PF13696: zf-CCHC_2" amino acids 222 to 242 (21 residues), 37.2 bits, see alignment (E = 3.2e-13) PF00098: zf-CCHC" amino acids 227 to 241 (15 residues), 24.4 bits, see alignment (E = 3.5e-09)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (680 amino acids)

>mRNA_200 K15541 MPE1 protein MPE1 (Rhodosporidium toruloides IFO0880)
MSSSFVFYKFKSQREPSRIAFDGTAISVFDLKKEIIAENKMGKGADFDFAIYHADTEEEY
TKDHELIPRSTSVIARRLPPSRPGRGNALKYMAGTEESGVGLQAGRGAAPEPRGGVGSGF
SKDMFTKRFDGREDARPSPAQDSPQVQIPAAAPTDEASAMAAMFAATNSQWQQTQEQMSH
ATPVYRNPPPGNRPHGQGPGRSGDGGNRPSFRDSGMAHKPPPPGYICYRCGQKGHWIQEC
PTNGDAAYDNRPRIKRTTGIPKSFLTEVQGPQVPTGEEGDGPATNGVKSGIMVTAEGGFV
VARPDSASWLAHRALTANLSANDIQNLAPTDPDLTCPVCSKLLRDAMLTPCCSTSFCDEC
VTNALLDNDMLCPECETRVKSLEKLKPDEGRRERVTKYVDEMMQASKEAAEEERKKLEAE
EEQRKSAEAKRKAEEEAAAEKAAENGENGEEKEAVKEEDVKKEEEELFPAKPEEILNPRK
PRPGEEIKPTVPAGSPAPVDSVKSEPAASASPPRAPSATPGLPAVPQIPPGALQAQQLRQ
QQQLRAQQQQQMLAMQQQQMMGVGAGGMGGMPSPQMIQQQMFQLSAMLQNPGLPPPMRMQ
LQAQLQQCQMMLVQMQQRMAMGMQGGRPGMMGGMSPMMGGMQQGGGGMTPAGSAGGAGQK
RGREEDGGDASPAAKKTEVA