Protein Info for mRNA_211 in Rhodosporidium toruloides IFO0880

Name: 8579
Annotation: K00432 gpx glutathione peroxidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 165 PF00255: GSHPx" amino acids 7 to 114 (108 residues), 131.8 bits, see alignment E=7.3e-43 PF00578: AhpC-TSA" amino acids 10 to 141 (132 residues), 24 bits, see alignment E=3.1e-09

Best Hits

Swiss-Prot: 55% identical to GPX2_YEAST: Glutathione peroxidase-like peroxiredoxin 2 (GPX2) from Saccharomyces cerevisiae (strain ATCC 204508 / S288c)

KEGG orthology group: K00432, glutathione peroxidase [EC: 1.11.1.9] (inferred from 63% identity to uma:UM01784.1)

MetaCyc: 48% identical to hydroperoxy fatty acid reductase 1 (Synechocystis sp. PCC 6803)
RXN-13944 [EC: 1.11.1.22]; 1.11.1.- [EC: 1.11.1.22]

Predicted SEED Role

"Glutathione peroxidase family protein"

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 1.11.1.22 or 1.11.1.9

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (165 amino acids)

>mRNA_211 K00432 gpx glutathione peroxidase (Rhodosporidium toruloides IFO0880)
MASVASFYELEAEKPSGDKIKFDDLKGKVVLVVNTATKCGFTYQFTGLEELNKKYKDQGL
VVLGFPSDQFGHQNPEDDETTGSVCQRNHGVTFPLLKKGDVNGSNAHPVFQYLKPKAKGI
LGERIAWNFTKFLVDKRGNVIHRYAPITKPDAIAADIEKALAESV