Protein Info for mRNA_222 in Rhodosporidium toruloides IFO0880

Name: 8590
Annotation: K12795 SUGT1, SGT1 suppressor of G2 allele of SKP1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 211 PF04969: CS" amino acids 5 to 81 (77 residues), 59.9 bits, see alignment E=4.1e-20 PF05002: SGS" amino acids 121 to 209 (89 residues), 113.2 bits, see alignment E=5.2e-37

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Find the best match in UniProt

Protein Sequence (211 amino acids)

>mRNA_222 K12795 SUGT1, SGT1 suppressor of G2 allele of SKP1 (Rhodosporidium toruloides IFO0880)
MSKIRHEWYQTEGEVVVSVFIRNVKEEDLKVELQERSLSLSVHLPTGSDVVFDLDPLAHA
VDVSASSHRVLQPKIELKLKKKEGGVKWNKLEGEDESIVKMGQATEEKVDHSYPSSSRKR
HNWDDIVKQSAKEDEALAEELRKNPNAGGDKALNELFQKLYADATDDQRRAMIKSYQESN
GTALSTDWKDVSKRKVETRPPDSMVARKWEQ