Protein Info for mRNA_223 in Rhodosporidium toruloides IFO0880

Name: 8591
Annotation: HMMPfam-Protein of unknown function (DUF1212)-PF06738,HMMPfam-Protein of unknown function (DUF3815)-PF12821

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1127 transmembrane" amino acids 781 to 804 (24 residues), see Phobius details amino acids 813 to 832 (20 residues), see Phobius details amino acids 838 to 862 (25 residues), see Phobius details amino acids 874 to 892 (19 residues), see Phobius details amino acids 928 to 945 (18 residues), see Phobius details amino acids 957 to 976 (20 residues), see Phobius details amino acids 982 to 999 (18 residues), see Phobius details amino acids 1006 to 1027 (22 residues), see Phobius details PF06738: ThrE" amino acids 655 to 894 (240 residues), 183.2 bits, see alignment E=5.5e-58 PF12821: ThrE_2" amino acids 952 to 1021 (70 residues), 35.2 bits, see alignment 1.3e-12

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1127 amino acids)

>mRNA_223 HMMPfam-Protein of unknown function (DUF1212)-PF06738,HMMPfam-Protein of unknown function (DUF3815)-PF12821 (Rhodosporidium toruloides IFO0880)
MAEPNSNPFDQPYPSNGTPSAPTPPPGLVLPTPPPRLVIPDDSPPSSDSRQAHDSDGGYL
HESVTSNGSADEGTVSSHTMLNASQGTQASGANRRVQWPANLPDQKGHSHVAIDMAQQVP
TSPSGRNLTSPGAQAELVRALEAAADAGTDDEDEVEPGRRYIGGEGGASRAASSDGDPEE
RLEALKDNMEVFVDPGERDGLPSTSKRDPAEKSTRAAWGLVRGLTQGGHFHSSLRRRKQS
EAPAAPGGFTSGTGANAEDEKKGDGEEEGKSTGETLRERLRRADVQDLPPDASYASNGLG
SGGILSALIALQQQQQAAARGGSASISGATTPASLGPSSRASSIAEGDDTDEEEEEAERL
KFLAKLHEKRAQKNRLHNIAGGLASGATGVAVGAGRGANAVIGTAGRGAGAVIGTAGRGA
GAVIGGAGKAVGAAGTALGVNAASKSHSKTPSVENTPATGEEGEAKKRKGILDRTRNAMG
LDERPEAAKSGAGVFGGLVLGAGSLAGVATPQHAALAPDPTKAGHTISRWELAKDGGRSR
SGSVEGSSTQGSPVVARSALSTPPLSPGHEKRNPFSLSLGNLKDLPLHTPKFGHSPGHGS
PRKELGDYFTKETEEEADRKAWEKEKRRRRKAREKRKAQEVFITQHVAAIIERQQFIMKM
ARAFMMFGAPSHRLEAQMQATARVLEINCQVIYIPGVMMLSFGDAATHTSDIKFLKQANG
LDLGKLMAAYLVYFNVIHDRVSVTEASRELDELMVSPPKYALWQQLIIGACASAFIQPSA
FYGSFIDCLMAMPLGSLLVLVQVLVSRNDLYSSLFEIVIACIISFISAALASTQYFCFAA
VVSGSVVLILPGYIVLCGSLELANRSIISGSVRLVYAILYSLFLGFGLSIGSELYNRTGL
TIYGLTDYTCSSLRGTNARGWWMDTIPAWWYFLTIPMFLLTLSVRNGQPLFRKETPVMIL
IGCAGFVSNYFSGKAFKNRSDIASAIGSFAVGFLSNVYGKFTRGSAFVVAVPGVLVQLPS
AAEGVVAAPTSRPSRRQSSTHVRSHLVHTLPAIHIISQVEAPRLALTRRDLSLLFLYRLV
TDTRLSSVGQHLDLDSSSYTASRARTYRQHRPQLRNLAVPSLRSTHL