Protein Info for mRNA_231 in Rhodosporidium toruloides IFO0880

Name: 8599
Annotation: HMMPfam-Urb2/Npa2 family-PF10441,SUPERFAMILY--SSF48371

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1540 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details transmembrane" amino acids 1289 to 1306 (18 residues), see Phobius details amino acids 1322 to 1340 (19 residues), see Phobius details amino acids 1347 to 1365 (19 residues), see Phobius details PF10441: Urb2" amino acids 1275 to 1540 (266 residues), 146.8 bits, see alignment E=4.2e-47

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1540 amino acids)

>mRNA_231 HMMPfam-Urb2/Npa2 family-PF10441,SUPERFAMILY--SSF48371 (Rhodosporidium toruloides IFO0880)
MALLAEHALLYALRSPTTPLADKVASASSALDAQPGNVSLAATVRDWAVDALLRATRQQT
ADAGTAARLDAGLWELASRTAEATVSTSPVAASTLPIFVAFVTQYSQVAPSVELLRGAAS
VWSRLAANALRKATADASLDAYEKLLEASLRVFSREEAAGTEDERKVWTELAVNWLKPFR
SVVLEAGKGGKKIPSHALSLLPTLLPVLSRLPSTSPLRTSLLQTLQLAIFNLENLRRGLA
RDSYTVGGASTSSQPASSTADSELLAALAALPSAVTAAAYDALPSLTQIYFSAVAAHAET
LFPLPAKATFATPSAQKSAREVLGLTKRRELAGRWTRGVIDFLAWSKEADAMETNEAGLE
EAKSAALAGSLAVVEQNDLYRPGQAGESWDKVLPDIVSGAVSRLEGTANSSGREATFTIL
KTISNLDHDILEPALPRVLAVLARSPDLFTLPTPEVDAFLRHLIEHHSRSVTLPILLTRV
ADALASAASSTSNNSVLTSHAFLSQLGSAVNGTAGGPNAIRAAWQSLVDPVLDALQPSAS
TEAADAADAPSPAKKRKLSSASPSSILPAAARLRVADVLIRHAPASSLPGLVEPLRVFVD
EVVDSHIKDFAKASLVGVGAGEVDEESETPRKKAKKSSRRKSSGALAIDAGQVDPATTLG
VELLQLRYTAVSRLASDGLLSVAEGAEETSRWWEMRAKRRELLREVVEKGVPEAAVVSTN
VLLQQLELLPDVHGAEAVGIVQAVLSRIKDLASSDGASWSGRLRGLRAAEVGVAMWELLS
RRWLPLINNVASEDQLRQVASIVLASLRHASVPAGSVRSASAIMARLLRRADFWELPRLQ
GCLLPALRDLATLPSLSTPTEVLAAMATPTDKASKALRSLAPATLLETVDVFAAISTCVP
VEYLNKDTRRQLADRALALDLWVSSGEAVVQVDAKERAQQVLRSSVASLGVQANISSEVT
QRLLDTTLPTALDETLAFYRALVIEPALATLKQNQQAGELKRILDSFDGLSLGASTSAAG
PRKEAFFALLDSLVTAIPDATSLSEELPHSITRLVDQAKREIDKSLPTASSAFNQKSAMS
LAGLLVAYRSLWAAEHWLKKDKGQTEAATEFVHAAAASVVTLAASTSSERPPLRTVVATL
RLLALHAEVLRSSASPGKVDTRPFEMLLACHLVLRKSVDAADAAELDAEFASATTSTTVE
EYSAALQAVAEALATGTDPSFEHTLQVAKVLLLAGPEGSSRVAASSLSDILRQLLLLVER
KTADGSGSLELFVPVASFVESICGERPLLLSRLNTSSVLSLVSLILRPSPKLSSTGERSS
PASTVSEVFLTLATTVGHIVRHRKDHLVTLFPSLISVLSAFLSTLRRAGAGTLGSVLEGE
DETAAVVVGHRAEREAKSTFPAWIWEGGREAIGRNEARAVGRLLGSLTTKTTTTTASKRK
SAISTGQAEDASANTSLAAPLSKHAPFLLLDYLRACVHPTCPIPSALRAELQGGWSEILD
AMGKWEREALMKGLLSEDEEAERGVLRNLWKSWEKERYKG