Protein Info for mRNA_242 in Rhodosporidium toruloides IFO0880

Name: 8610
Annotation: HMMPfam-CorA-like Mg2+ transporter protein-PF01544,SUPERFAMILY--SSF143865

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1018 transmembrane" amino acids 757 to 774 (18 residues), see Phobius details amino acids 935 to 956 (22 residues), see Phobius details amino acids 978 to 1003 (26 residues), see Phobius details PF01544: CorA" amino acids 833 to 1001 (169 residues), 27.6 bits, see alignment E=9.4e-11

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1018 amino acids)

>mRNA_242 HMMPfam-CorA-like Mg2+ transporter protein-PF01544,SUPERFAMILY--SSF143865 (Rhodosporidium toruloides IFO0880)
MDGMELGELGAASLGSRLSEERRATREGDDARETAEQQDVRDSLEGDMGVGRLDAASPGI
AARPPRPDFIDLALPDLHLPDPALEVPAARPTRGGSLDLRLRPSDPSTVPASSPPLRTHF
HLSGSPPLPSSVPLRPILQNPTSPSSRPADHDGPRPHLTERPSSPTFASREDDEPHSEGL
PHRERRTPHPLYTPAPRKRRRRRRKAESVASGRTGKSSRSARSKVKHALRKVRRRTRRTS
MATGASVTSGSSSSSSSTTTTTTSGSSRSSTAGSTRSSSTWAGWRFWRNSSSGSSSSGDD
DSDTDSEWDPPTPHFTLLTPILSRPTLAYPAHLFSGATGSTMPTSAAGTPGPASGFATPG
PSDSPSAPVFELATSSTLAPALERLQAFWSERQQEDGLAGDIGAGVAGAATQPVPTDEAS
YFPDNPTAYVEEAADNGYTHDAATPAVTPGVSGGPSSKRLRGQQRTARAEERRLGKNRAL
ENGPAWWLDIMCPSVADMRELRKLVPLHPLTIEDILHQETREKMESFAGLGYYFIVFRAL
DESYFRYTSPSVSATSSPSTSAVNESDGSAETTENAEAASLAAMGFSSGRRGRVDIVEGV
GGKEGVEGVGVGAINLYLIVFGDGIISFHFEPIDQHIERVQGKLQQFGISRNFSSHWIAY
SLMDSMVDAFFPLMDFIEGESNEVDAYLADPRDQHSVNPKLAPSGVGVVAGRKIFDESVV
SIVVDEPAEGDKDKLDSDASVASIKRATVTRRAPTTVLRFFPIVPLPGGLLRVLPRTWVR
QTTRNFASTMLVDHEGIELHTLSRQTPVDAGVVPPNMRVSDDRLVSSSKFDRAVMLKRIT
DVRRLVVGLSRLLGPKTDVVRGLRKRTMEENLGLFKGDVKHDIAVYLGDLQDHIVAMQQS
LVFYDAILAHDHPAYLSVLRLSLEHAKRGTDMALVKLYIVTLTFLPINIVTSLFSINPHR
PQNGDENHLNPDGTPAPYTWFGGVIVIVFAVAVLIWSFVWFIFRSSRRARKKRGSPMR