Protein Info for mRNA_276 in Rhodosporidium toruloides IFO0880

Name: 8644
Annotation: K03679 RRP4, EXOSC2 exosome complex component RRP4

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 308 transmembrane" amino acids 188 to 206 (19 residues), see Phobius details PF14382: ECR1_N" amino acids 30 to 64 (35 residues), 53.5 bits, see alignment 1.6e-18 PF15985: KH_6" amino acids 170 to 209 (40 residues), 49.8 bits, see alignment 3.6e-17

Best Hits

KEGG orthology group: K03679, exosome complex component RRP4 (inferred from 63% identity to lbc:LACBIDRAFT_146089)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (308 amino acids)

>mRNA_276 K03679 RRP4, EXOSC2 exosome complex component RRP4 (Rhodosporidium toruloides IFO0880)
MADDFLDELADDLGRRGDLDAGEAGRVTGPGEVIADAQRWMRGHGTYVQDDKVLASVAGT
LERVNKLVSVRPLRTKYRGEVGDLVVGRIVEVGPKRWKVETHASQNAVLMLSSINLPGGV
QRRKLESDELQMRTFFQEGDLLVAEVQAFFGDGAMSLHTRSLKYGKLKNGQLVTVPPALV
VRSKSHFHTLPFGVDLIIGLNGYIWISKTIKKETRLDGEEAGFGEESGEGVYSGENEDIS
PSIRASITRVALLISLLATHCIPITAELVTEAHDVALRIVGDGPEGLRKLARRETGTEVL
RALAMGRE