Protein Info for mRNA_281 in Rhodosporidium toruloides IFO0880

Name: 8649
Annotation: KOG0653 Cyclin B and related kinase-activating proteins

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 517 signal peptide" amino acids 1 to 15 (15 residues), see Phobius details transmembrane" amino acids 236 to 256 (21 residues), see Phobius details PF00134: Cyclin_N" amino acids 70 to 196 (127 residues), 131.3 bits, see alignment E=1.8e-42 PF02984: Cyclin_C" amino acids 199 to 291 (93 residues), 32.6 bits, see alignment E=7.5e-12

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (517 amino acids)

>mRNA_281 KOG0653 Cyclin B and related kinase-activating proteins (Rhodosporidium toruloides IFO0880)
MKVPTAASLPAARATVYPRKRSPGIADQRGPSPPSKRTSPTSVEMQRHAQLSDAQKQLLP
LLERDYREDVRAYMYEMQSKTMANADMIDQQPELEWYMRAYLVDFLVEIHLQHRLRPETL
YLALNIVDRYVSKRIVFKKHYQLVGCAALWIAAKFEDAKDRVPTLRELVDMCCNAYDEKA
FVQMEGHVLSTIQWVIGHPTAEAWLRLACVTGQLEDARTQHVARFLMELTLFHREFILFY
PCDVAMAALLLARYMLGKPRRSQDESEPVIRIMLMLDELLGEHLEDVSPVVLKKYSFSCY
SRASIFAREWYLCGRRMAFPHQQAATTPVTPSRPLARTASSASAASSSSSASSIVDYGSL
TPNSQRSEDTSFTSDEDDDDEIDRDCLDDDDDDDEPLSPHTPHEPSSPFDPFTSAASDAA
SAAAHHAAVAAHSVRMGAGTGKENLLVARQGKPSGVVVGQPQAMPPSHRMPLEHASWEMN
HQHVASYASHHSYHGAHHLPPPSSSVASSPSIPSYCA