Protein Info for mRNA_290 in Rhodosporidium toruloides IFO0880

Name: 8658
Annotation: HMMPfam-Major Facilitator Superfamily-PF07690,ProSitePatterns-Sugar transport proteins signature 1.-PS00216,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 transmembrane" amino acids 12 to 30 (19 residues), see Phobius details amino acids 36 to 57 (22 residues), see Phobius details amino acids 72 to 98 (27 residues), see Phobius details amino acids 130 to 152 (23 residues), see Phobius details amino acids 164 to 185 (22 residues), see Phobius details amino acids 263 to 287 (25 residues), see Phobius details amino acids 304 to 325 (22 residues), see Phobius details amino acids 343 to 365 (23 residues), see Phobius details amino acids 423 to 443 (21 residues), see Phobius details PF07690: MFS_1" amino acids 15 to 196 (182 residues), 50.6 bits, see alignment E=1.4e-17 amino acids 272 to 433 (162 residues), 44.5 bits, see alignment E=1e-15

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (450 amino acids)

>mRNA_290 HMMPfam-Major Facilitator Superfamily-PF07690,ProSitePatterns-Sugar transport proteins signature 1.-PS00216,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473 (Rhodosporidium toruloides IFO0880)
MSHCSSSRASYEWFGAIAPILVLYLTALGFSDSNVGLFLSLTLFGDVVLALSISWIADSV
GRRRVLAVGSAMMAASGFVFFLSGRFIVLLLAATFGVISPSGNEVGPFSSVEVGMLSQLV
QPEDRIYVLMHYQILGFVGLALGSLVSGAVISHLEKGASSHEAYRFVFLAYGCIGLVKVA
LSLFMTPYTELDHPHFPERLVDSPEASEDEETDVDDEPTCDERQSLIAKRPLIDRTASST
PQAVITTTKLTLGDLDDAEESALPLLSLVFIVLLFSVDSFASSLTPASYVSLYLKSEYGA
TIRTITTVLASSALGAVVTSLLTGAISKRIGLVLTMVTTHIPAQILTGAMAFAPTLPIVI
GLYIARTCISSMDSSIRGALLSAMVPKHARTRLLGISDVARTLAAAPGPFVTGRLVEIDR
LRWVFVISGAIKIGYDLALLGGFRQTKLQH