Protein Info for mRNA_291 in Rhodosporidium toruloides IFO0880

Name: 8659
Annotation: K03012 RPB4, POLR2D DNA-directed RNA polymerase II subunit RPB4

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 105 PF03874: RNA_pol_Rpb4" amino acids 17 to 96 (80 residues), 48.8 bits, see alignment E=4.6e-17

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (105 amino acids)

>mRNA_291 K03012 RPB4, POLR2D DNA-directed RNA polymerase II subunit RPB4 (Rhodosporidium toruloides IFO0880)
MLTISEVKLVLESLDNPPDNAVYNKTKDYVDTFARFHDHETASNVRSSFPNPPFQFFEQV
QLVNLCPMEAEEAKALVPSIQVEDDQLQQYLDDMTRARKAQQPPA