Protein Info for mRNA_292 in Rhodosporidium toruloides IFO0880

Name: 8660
Annotation: HMMPfam-Endoplasmic reticulum-based factor for assembly of V-ATPase-PF11712

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 260 transmembrane" amino acids 172 to 190 (19 residues), see Phobius details amino acids 196 to 219 (24 residues), see Phobius details PF11712: Vma12" amino acids 93 to 224 (132 residues), 73.4 bits, see alignment E=1e-24

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (260 amino acids)

>mRNA_292 HMMPfam-Endoplasmic reticulum-based factor for assembly of V-ATPase-PF11712 (Rhodosporidium toruloides IFO0880)
MVLLRLTPALRSRLDTPAPRLPEELREQIAAFLVDEEEERASSGRDDEDAKGAGGAGKEQ
GQRTVPHELLVRVSRWARGRNNLEDPDLYRLASLLRLTDVYAPPLPPREKSPELLAILAD
IQLQQDRRSYASLTSLAPAPHPSLIPLDDPFSFKSHKTPAEEWKEIRREVSAIANVGASM
LAVGTGVWWVGGGRSYAARLCLALSGALAIAIIEGWLYWRFFSRLDAPPKASASAGKAAR
PGSGARRGLPRNGNIRAKKQ