Protein Info for mRNA_296 in Rhodosporidium toruloides IFO0880

Name: 8664
Annotation: K20177 VPS3, TGFBRAP1 vacuolar protein sorting-associated protein 3

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1129 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF00780: CNH" amino acids 106 to 350 (245 residues), 34.7 bits, see alignment E=2.4e-12 PF10366: Vps39_1" amino acids 631 to 734 (104 residues), 27.1 bits, see alignment E=6.3e-10 PF10367: Vps39_2" amino acids 1004 to 1072 (69 residues), 39.5 bits, see alignment 1.1e-13

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1129 amino acids)

>mRNA_296 K20177 VPS3, TGFBRAP1 vacuolar protein sorting-associated protein 3 (Rhodosporidium toruloides IFO0880)
MLRDAGAAAGAAAAGAVHGAAGGEPKPLTLKSVEAGGQKVWAGLSDGRVRLYEVGEEVDA
PAGAGVASPRVASPTTPGRRPSVAPKQTQLELLDELQVTTNKKAADRIALLPRLDKAVIL
SEGVMTFHALPGLAPLNVHNFPAVRGVVTLAVDEEELSSSSDSAAMHMCVIKRRRMHWLK
VTNEGIQNLKDLPLPNGALIASLRRDRICIADAENYSIVDLEAAEALPLLPISQAPHPDP
LPPQTTASGAATPPAPGAGPDPRQRPAIACVASNEFLVASHTGSTTLGVFVNESGEPCRG
TLEWASNLRSLVVDSQYSIALLYNNTIEIHSIHTQEIVQVVQLPSSSPAASPSPLDFQPR
SLFRSALGLELGAATGAQKIEPVDVPLLPSSPAKSDPPRTPTKRASRASISSASIRSGIS
GATGSSEDRPGKRTLTRVLVVGRNGLYSLSPLTLVVQADALIDKGRDADALALADNFAKS
ASGGIAENPELAYVYMRLAFLKLEQTLFQEAFDLFARAGSDPRMVVRMFPDLRRPLMAPG
DEVTVCKGVLDEMRSAKTIDEYILDNLNRNYSPHLKPNVESAATTVELRNSLTMTARDCL
MSYLLKWRAARRSGEGEDGMAGDSRKVDMVVDTTLVKLLTEQSRPDDIRVLLSGPHDCVV
KEVEQALLDAGLYQLLAGILLEKGETARVLEIWSRIIDGEYADESFKDGLQRMFDMTWRS
KDKSLVEKYGLWMLKHDQSRALRLFSDPKQTITFETRDLFAKMSKVDPDAADRFLESTVL
QERDSDSRLHADLVKRYIGRLGELLADAEAKAHVREQESAYASLVASTSNPPTFLAFLTS
RYSADSSRALLDRVRLKAALFLSGSTKYDVQAAKQELEEMEVKGLRGLTLERAIVYGKLH
LDRQALSLLLNNLHDLASAEAYCLQSGDPLAQADVVAATSKLELPFKRNRKALSAARREE
EERRKQALAKLLVEMCLRRPQAGSFVDETDKTDEGAVPKERVARLLETQAVHLDTLEVLS
LVPDDYPLQVLSRYLSRSLRRSLHVQQERSILKSLALGQNLVVQERAFELQARLGPTVEA
KDDTKGGAGGAALETKVVVLDPKRDNSGKSVAPEKDIVSLEDAIELDLR