Protein Info for mRNA_298 in Rhodosporidium toruloides IFO0880

Name: 8666
Annotation: KOG0725 Reductases with broad range of substrate specificities

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 328 PF00106: adh_short" amino acids 82 to 277 (196 residues), 157.1 bits, see alignment E=6.1e-50 PF08659: KR" amino acids 84 to 264 (181 residues), 33.3 bits, see alignment E=6.9e-12 PF13561: adh_short_C2" amino acids 91 to 323 (233 residues), 189 bits, see alignment E=1.6e-59

Best Hits

Swiss-Prot: 46% identical to GRDH_DAUCA: Glucose and ribitol dehydrogenase (CAISE5) from Daucus carota

KEGG orthology group: None (inferred from 50% identity to ppl:POSPLDRAFT_103654)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (328 amino acids)

>mRNA_298 KOG0725 Reductases with broad range of substrate specificities (Rhodosporidium toruloides IFO0880)
MQAAADAVKSAVQNTGASSAGSSTVQDKFSQGWKPDANAEKEAQGGDDSRPPGTQHTMKD
KPVDDILADGTPYKPAAKLEGKAILITGGDSGIGRATAILAALEGANVAIAYLPEEQKDA
DDTKEYIEKRTNNQSKVLLLPLDLKSEANCIKAVDETVANFGRLDVLFNNAAQQLENKDI
TTLDSKQWEDTFQINMHHMFYTSKAAIPHLAKTKGNIVNNASVNAFIGRPDLLDYTSTKG
AIVAFTRGLANQQAEKGIRVNAVAPGPILTPLVPATFSRENLEGTNSVPLGRTGQPIEIA
APVIFLASSHASYISGNTLHVNGAQYVH