Protein Info for mRNA_302 in Rhodosporidium toruloides IFO0880

Name: 8670
Annotation: K00668 FAS1 fatty acid synthase subunit beta, fungi type

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1266 transmembrane" amino acids 144 to 156 (13 residues), see Phobius details amino acids 346 to 357 (12 residues), see Phobius details PF17828: FAS_N" amino acids 20 to 160 (141 residues), 47.2 bits, see alignment E=4.5e-16 PF16073: SAT" amino acids 193 to 458 (266 residues), 107.3 bits, see alignment E=2.3e-34 PF08354: DUF1729" amino acids 775 to 1128 (354 residues), 511.4 bits, see alignment E=2.3e-157 PF17951: FAS_meander" amino acids 1197 to 1259 (63 residues), 47.7 bits, see alignment 3e-16

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1266 amino acids)

>mRNA_302 K00668 FAS1 fatty acid synthase subunit beta, fungi type (Rhodosporidium toruloides IFO0880)
MNGRATRSVTGTSTPVHTATTRPLVLLHPSTQTRISLHVPSTSQEWIAAEVARDTFQDWL
HAAEKSGNLVGFEAAELDDEQAGEGDDEKELVLTAYFLKHVAGLLPFPSTATSPATAAVL
LAAFNHFASVYLSGTDVHTLTASLAAPVRALVISSFFLAKTKLEVEGLGKVLPKQSESAL
LQKAATGQAEVFALFGGQGMNEVYFDELQTLYDLYTPLLTPFLARASEHLVSLAAAEQHT
LLYDHSLDALAWLQDPSTRPEVPYLATCAVSLPLIGLTQLCQYVVYGKGSSLGPAELGAK
FKGATGHSQGVVSALVIAHEYPPAAKDGSDAWEPFYEQALRGLIVLFQIGLQGTLAFPSI
AISPALESSSVENGEGVPTAMLAVTGLDLKSLEKKIAEVNGHVKLEGRDETVSISLYNGA
RAFVVTGAPKDLVGLADGLRKNRAPAGKDQSKIPHSKRLPVFSMRFLPINVPYHSHLLQG
ATEKALATFSAEEAAHWAPSSFTCAVYNTEDGSDMRQLSASSVLESIFQQIFTSPIHWVS
HATNFPSSATHAIDFGTGGASGIGSLCARNWEGRGIRTIMLGNRGEGTGAGKEAWGKKVP
TEEKWNERFHPRLVRTSDGKIHLDTPFSRLLSKPPLMVGGMTPTTVKAGFVSAVLRAGYH
IELAGGGHYNEKAVRAKVAEIQKLVNKPGIGITLNSLYINQRQWTFQFPLWAKMKQEGEP
VEGLCVAAGIPSTEKAKEIIDTLREAGIKHVSFKPGSVDGIRQVVNIASANPDFPIILQW
TGGRAGGHHSCEDFHAPILATYASIRQHPNIKLVAGSGFGSAEGCYPYLSGEWSENQYGV
ARMPFDGFMFASWVMVAKEAHTSESVKQLIVDAPGVEDGQWEQTYDKPTGGILTVNSELG
EPIHKVATRGVKLWAEFDKKVFSLSKEKQLAWLADNKKYVIDRLNADFQKPWFPAKADGS
PCDLADMTYAEVNARLVRLMYVAHEKRWIDPSLRNLVGDWIRRVEERLSNVNDSGVKISA
LQSYSELNEPEAFLKKFLTQYPQAEDQILASADVSYFLAISQRPGQKPVPFIPVLDANFS
IWFKKDSLWQAEDIEAVFDQDPQRVCILQGPVAAKHCTSTQTPVAEMLGNIEHQLVKNVL
DDYYGGDESKIPTIDYLAPPPKPVDAGAILAENNIAHSVEELADGGKKHVYSINGVLPPT
GDWLAALAGPKLDWLQAFLSNVSIQAGEQSIPNPVKKVLAPRHGQRVELTLNKDGQPLKL
DVFGGL