Protein Info for mRNA_369 in Rhodosporidium toruloides IFO0880

Name: 8737
Annotation: K20309 TRAPPC12 trafficking protein particle complex subunit 12

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 503 PF14559: TPR_19" amino acids 398 to 453 (56 residues), 25.6 bits, see alignment 7.2e-10

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (503 amino acids)

>mRNA_369 K20309 TRAPPC12 trafficking protein particle complex subunit 12 (Rhodosporidium toruloides IFO0880)
MQSDAPTLSAAEPQPYTVASSPHQSTSLQSPPLPPLPPPDGVPTGASAFATPSAPADTRH
QPSHDTLPPPVPASPPSVNRQQSLAETLKDLQEQAAFVQRSSAARTVVAISPIVASTAVE
PELGAEGSVSELYIAGLTARELFVRLPESDDVSLLLEKYLRPEHRPARDLSGDWRDKTLD
ELISTHNWRGVARYCYDAITQSPPEQTTYILSHWLLRFEALVRLRLIQPLAAELASITSL
LPPSSCFGPVELSEPSEADIPLFHPAVPFELHVLVASLPSLQGQQARSVELVSMLLRSCK
DALWTAKPEGREEDERIWTGRVERLGVLLAELLADIKASPSAFSLLSSATPHSPAVLSAL
CRLNISSGDITSLDRSLSSLPAEDPEKARRRMQVLRDVADGKYVEAEVELRRIVDENADD
VEARTNLAVVLLYLARVEEATTLLTSLLSTHPHIAYNSPTILFNLCTLYEISTEHATAKK
VGLLRDAARYGAQGIERGCFKLK