Protein Info for mRNA_373 in Rhodosporidium toruloides IFO0880

Name: 8741
Annotation: KOG2542 Uncharacterized conserved protein (YdiU family)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 722 PF02696: UPF0061" amino acids 210 to 665 (456 residues), 362.2 bits, see alignment E=2.3e-112

Best Hits

Predicted SEED Role

"Selenoprotein O and cysteine-containing homologs"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (722 amino acids)

>mRNA_373 KOG2542 Uncharacterized conserved protein (YdiU family) (Rhodosporidium toruloides IFO0880)
MASAHPTSILSLPISPRAPIYHLPPDPLFPSTKSLLDLGKYDAPEDLGQNGPVALKAGDP
VPPSMLRRSRQIRSGGCFTYTSPLPIEFPYNIREEGAGDAADTKPSTIETQLASYEISTS
LPIWDASLPPNNGGAPATAFSSGKRESSAYSKARLLSVSRGLLRDWLPNLELGKSEKEGG
DEEQQKIRQQFVDVVAGKTVLAREPTEAEDDLAKAKGFAPWSLCYAGHQFGSFAGQLGDG
RAISILSTPPTPEVAAKTGFQAIELQLKGAGRTPYSRFADGLAVLRSSIREYLGAEAVAA
LKIPTSRALALVHMPSVKVRREMMENAAIVTRVSGSWIRIGNFEQQAYREEYDSLLALSH
YVAHEVFAFSDSNPAGVGPSRSQALNIVREVARRNAITVAGWQTYGFMHGVMNTDNIAVN
GATIDYGPYAFMDIFDPEHICNHSDDLGRYRFSNQPTMMLFAVHKLGEALAELIGCEVEM
AEKDKDGTGFVEAQKGWAEGGKAEMERWKEVGTEEVNKVKADFVEIFRAEYQRQMRLRLG
LTTADDGDFKLVSNWLDLLSEHELDFTRSHRLLSQFTSTSDPTFQRLLDAMIPSASSSTS
TARDSLTTWFKLYEERLAKDGADAASDRRARMDAVNPRFTLRQWVLEETIQKVDKSPDDG
GIEQLERVLDMALNPFERYGEPEVKEGETDQGVCPTKEETERARLCGTGPRDFLGFQCSC
SS