Protein Info for mRNA_375 in Rhodosporidium toruloides IFO0880

Name: 8743
Annotation: HMMPfam-Cytidine and deoxycytidylate deaminase zinc-binding region-PF00383,ProSitePatterns-Cytidine and deoxycytidylate deaminases zinc-binding region signature.-PS00903,SUPERFAMILY--SSF53927

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 328 PF00383: dCMP_cyt_deam_1" amino acids 59 to 225 (167 residues), 39.2 bits, see alignment E=5.6e-14 PF14437: MafB19-deam" amino acids 178 to 252 (75 residues), 29.9 bits, see alignment E=4.4e-11

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (328 amino acids)

>mRNA_375 HMMPfam-Cytidine and deoxycytidylate deaminase zinc-binding region-PF00383,ProSitePatterns-Cytidine and deoxycytidylate deaminases zinc-binding region signature.-PS00903,SUPERFAMILY--SSF53927 (Rhodosporidium toruloides IFO0880)
MPDPVNASTASPAAPQPSYSFPPPTIPETLEARISAYQTNVLPTNYSFDPTLSTDDNYMV
LTLIYARLSMSKRGNMACIVVDPLGGRKEEKEEGTPPAKRARREEEEREDFRNYPGRILS
HSNNFPQPTSAPSTSSSTSSASDGTDPPKKPSLKPGKQPRQPKPGQSAFLACAAVAPELH
AEARAICLAAARGVSLAGSTAYVSFPPCQHCLPLLVAAGVRRLVYRQRMNTGSSVELCKL
EGVECVEYTDKKVDEALKERVRRWWKERGEGREETRGRMEKWWREEEKRVMGKMAGAEEA
KEQVEQADGNGQAEGDALPVDLVATTTS