Protein Info for mRNA_404 in Rhodosporidium toruloides IFO0880

Name: 8772
Annotation: HMMPfam-PB1 domain-PF00564,HMMPfam-Zinc finger, ZZ type-PF00569,ProSitePatterns-Zinc finger ZZ-type signature.-PS01357,ProSiteProfiles-Zinc finger ZZ-type profile.-PS50135,SMART-Zinc-binding domain, present in Dystrophin, CREB-binding protein.-SM00291,SUPERFAMILY--SSF54277,SUPERFAMILY--SSF57850

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 820 PF00564: PB1" amino acids 20 to 73 (54 residues), 31.8 bits, see alignment 1.1e-11 PF00569: ZZ" amino acids 423 to 454 (32 residues), 30.2 bits, see alignment (E = 3.2e-11)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (820 amino acids)

>mRNA_404 HMMPfam-PB1 domain-PF00564,HMMPfam-Zinc finger, ZZ type-PF00569,ProSitePatterns-Zinc finger ZZ-type signature.-PS01357,ProSiteProfiles-Zinc finger ZZ-type profile.-PS50135,SMART-Zinc-binding domain, present in Dystrophin, CREB-binding protein.-SM00291,SUPERFAMILY--SSF54277,SUPERFAMILY--SSF57850 (Rhodosporidium toruloides IFO0880)
MAAVVVKASVYGQPLARRVSFRDAHTLDRDSLANKLARSFTLQPDTFRIAYRDDDNDLIE
LATTADLHECLDYFSTDPSLSSSSSSYSLSKPVACITVKLELIVEYDGPSLSETDAASSV
WSAAPSSWRRGGAAPASRASSFGAEREGVLRRWRMQQQEATVDAEEEDAASDDWLRRPAF
AIAVGSRTPIDSASSSASASAIDADNEQDWDTRTVSSISFAPGPLSHSHPDLSARRPTQR
SEDALYPNFAPPPRWLSTLGPAAHPPYPLPFSFTPYSAPKLPIVPSEHDCALPLAHHQAP
LFAAQTSYFGRPSSAHSLPSDFSGLDLEEGPSPSQSLRERVQDLFAPSSDEESLHGRAGG
GAGDPLLGREVQTASLFAPARKAESSYTVTDSDSDSDSLPLPPFPSKTSTLRARPRNLVL
AGEYWCAECGRKIEGARYSCAVCEGFDLCRECELNPPSRSSRRPRGPETIPLTHGPSHIL
LKIPISLSSSSSSSALVSARELASSLSHSAPLPPPPSEGSYLQEGDLTSYWSWWERWYAQ
GQVPAGSREREEEVSKHSWSGIEGRTSAGGVGGAGGGGDKRKEEHTYPPKPPASPAPPAL
PAHPSLSSSAIVRPSTFTRFSSPHFTHFALASHGVRCRNCEEMIVASHNSTGGGGGGGGG
EQGVRWLCGNCPTVPSYDLCPTCEPLSTRIHDPTHTFLRLTHPLRRSLPSISQGLLPLLC
LPPTSDSQEDRKDEEVVHRTVICDACGVRIKGAWMRCCHCPTSYDLCRPCLLSSAPIAAG
HNPSHVFAALKRPVDLDLLKSVTRITSRRPRGLVEWDLYA