Protein Info for mRNA_411 in Rhodosporidium toruloides IFO0880

Name: 8779
Annotation: K12862 PLRG1, PRL1, PRP46 pleiotropic regulator 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 430 PF00400: WD40" amino acids 144 to 182 (39 residues), 32.4 bits, see alignment 6.2e-12 amino acids 214 to 251 (38 residues), 25 bits, see alignment 1.3e-09 amino acids 257 to 293 (37 residues), 26.3 bits, see alignment 5.3e-10 amino acids 341 to 377 (37 residues), 22.5 bits, see alignment 8.2e-09 amino acids 402 to 426 (25 residues), 12.7 bits, see alignment (E = 1e-05)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (430 amino acids)

>mRNA_411 K12862 PLRG1, PRL1, PRP46 pleiotropic regulator 1 (Rhodosporidium toruloides IFO0880)
MTDSLPPIDHLVRKSAKRAHAVFSAEQAFSISNADDANERSTKLRLATKIEAEYRNAKVL
PAALVAQQKGAAGPARPAGSQAATGPQRLTIEGPMAKTVETLSSQALTTTSSLPASHAQP
TLLSQSLIRRREARQVKPDYHAPWKLTRVISGHLGWVRAVAVEPGNKWFATGAGDRVIKI
WDLASGELKLSLTGHISTVRGLAMVKCWDLETNKVIRHYHGHLSGVYSLALHPTLDVLIT
AGRDASARVWDMRTKAQVHVLTGHTATISDVKAQESDPQVITGSMDSTVRLWDLAAGKTM
TTLTHHHKSVRSIAIHPTEYSFATASAGGNNIKKWACPNGTFVHNFSGHDAIINSISVNP
DGVFFSGGDNGSITWWDWKTGLPFQTDQDTPQPGSLDAEAGIFCSTFDQTGTRLITGGAD
KTIKIYSEQA