Protein Info for mRNA_415 in Rhodosporidium toruloides IFO0880

Name: 8783
Annotation: K03511 POLK DNA polymerase kappa

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 736 PF00817: IMS" amino acids 141 to 282 (142 residues), 132.2 bits, see alignment E=1.6e-42 PF11799: IMS_C" amino acids 372 to 500 (129 residues), 36.1 bits, see alignment E=9.5e-13

Best Hits

Predicted SEED Role

"DNA polymerase IV (EC 2.7.7.7)" in subsystem DNA repair, bacterial (EC 2.7.7.7)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.7.7.7

Use Curated BLAST to search for 2.7.7.7

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (736 amino acids)

>mRNA_415 K03511 POLK DNA polymerase kappa (Rhodosporidium toruloides IFO0880)
MATCSRTTVAQRVSPVAGGSVSGQPGAGTAQAPSRKRAWEGEEPKASLLKRMAGPSDLKA
GVGGKKTAEEVQRMIFEASKGSKYFNDQQRRDKELEVKVNRLKGILASKELTATGDEEQK
VDAILEELAEKRDLSRVIALIDADAFYAACHELEDSSLKGTAFGVGGGMLTTASYEARKY
GCRSAMPLFIAKKLCPHIKSLKMQPDLYVAASKKIMSVLEKYGPIAPASLDEAYVDMTDY
CANQGVTPTEAISRLRADVKETTGLTVSAGVSPNKSLSKIAADMNKPDGQFVIDSTAEAC
QAFIKGARLRKCYGIGRVTETLLNGLGLETVNDIYTYRKRLYLIRDHLGSSGVFRWLLSL
YLGMGSNRVVRAKRGDRKTYGVEKTFTPTDNRDALDDTLRKVAKSLAKDLARSEFSGRTI
TLSIKHDTYERVTRAYTPGKNVWIRSYEDIVRLGLHLLHKEMDDRAAAIKRGEKVKGGKG
SQLKARLLGLRMSNLRDEREVKRGNKLDGWVKATPSKLPDIQLSDSDSDMLHESDNSDEG
ECDGWEASKRQLEQLAKDAEVDPLAAEDDWDDSHGGASGSGTGRWMVVDDDDEDDVVLSG
KTRSLVSRTSSLPPAPPATARRTSSSSSAGSIGAKHPASTSSAARQRSPSNSRASPTAST
DSRPAKKRKTDSPPPTKPISEFTCPVCQKTLVGSETAMSGHVAQHFEAPAKKTKKKTSTS
SGLKKGVGNSLSKKKR